Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_A18
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 331 9e-92
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 331 9e-92
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 331 9e-92
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 68 2e-12
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.39
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 1.6
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 6.3
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 8.4
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 331 bits (813), Expect = 9e-92
Identities = 147/203 (72%), Positives = 174/203 (85%)
Frame = +1
Query: 217 R*VVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNV 396
R VV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV
Sbjct: 41 RGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNV 100
Query: 397 MPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSS 576
+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS
Sbjct: 101 LPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSS 160
Query: 577 NRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGK 756
RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G
Sbjct: 161 ARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGH 220
Query: 757 ASTVKRXTSAGRKVGLIAARRTG 825
++TV R ++ G+KVGLIAARRTG
Sbjct: 221 STTVPRQSAPGQKVGLIAARRTG 243
Score = 64.1 bits (149), Expect = 3e-11
Identities = 29/42 (69%), Positives = 37/42 (88%)
Frame = +3
Query: 93 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIK 218
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIR 41
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 331 bits (813), Expect = 9e-92
Identities = 147/203 (72%), Positives = 174/203 (85%)
Frame = +1
Query: 217 R*VVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNV 396
R VV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV
Sbjct: 41 RGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNV 100
Query: 397 MPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSS 576
+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS
Sbjct: 101 LPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSS 160
Query: 577 NRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGK 756
RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G
Sbjct: 161 ARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGH 220
Query: 757 ASTVKRXTSAGRKVGLIAARRTG 825
++TV R ++ G+KVGLIAARRTG
Sbjct: 221 STTVPRQSAPGQKVGLIAARRTG 243
Score = 64.1 bits (149), Expect = 3e-11
Identities = 29/42 (69%), Positives = 37/42 (88%)
Frame = +3
Query: 93 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIK 218
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIR 41
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 331 bits (813), Expect = 9e-92
Identities = 147/203 (72%), Positives = 174/203 (85%)
Frame = +1
Query: 217 R*VVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNV 396
R VV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV
Sbjct: 41 RGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNV 100
Query: 397 MPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSS 576
+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS
Sbjct: 101 LPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSS 160
Query: 577 NRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGK 756
RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G
Sbjct: 161 ARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGH 220
Query: 757 ASTVKRXTSAGRKVGLIAARRTG 825
++TV R ++ G+KVGLIAARRTG
Sbjct: 221 STTVPRQSAPGQKVGLIAARRTG 243
Score = 64.1 bits (149), Expect = 3e-11
Identities = 29/42 (69%), Positives = 37/42 (88%)
Frame = +3
Query: 93 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIK 218
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIR 41
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 67.7 bits (158), Expect = 2e-12
Identities = 41/125 (32%), Positives = 69/125 (55%)
Frame = +1
Query: 379 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 558
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 559 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGN 738
+ + ++ +G+V+ + + KAGR+ ++ R P VRG AMNP +HPHGGG
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS--RWLGIR---PTVRGTAMNPCDHPHGGGG 274
Query: 739 HQHIG 753
+ IG
Sbjct: 275 GKSIG 279
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -2
Query: 605 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 435
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 616 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 708
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 6.3
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 9/180 (5%)
Frame = -1
Query: 822 GPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NTTYIWPAVTFDLVLVV 649
G ASS+ + A SS +GSL Y T V ++ R G ++T + + F
Sbjct: 439 GSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSIFSTATEA 498
Query: 648 CPSSFQNRFVNTSTSSNNTDHASVA*WQNLLG--SRR*LYSCTLSI--RIVSNHSGEVSR 481
+S Q +SS + +S + + + G S L S T S+ + N S V
Sbjct: 499 TDTSVQTSSAIYDSSSTSNIQSSSSVYASSTGALSSNSLSSSTSSVSTSYIPNASSSVYA 558
Query: 480 GTCQTTSITHFLFKIAHNGT--LRHSSNRHHI-SNFKSCFLSTINKLACVEPFGSNEELL 310
+ + S + T + +S+ + + SN + T++ + S E++
Sbjct: 559 SSTEALSSNSLSSSTSSASTSYIPSASSSYEVASNSSDYYSQTVSSITASGTTSSTSEIV 618
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 464 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 366
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,670,900
Number of Sequences: 5004
Number of extensions: 79494
Number of successful extensions: 230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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