Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_A16
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.057
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.13 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   5.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.057
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 868 PPPXGXXGXXFXPPPPPPP 924
           PPP G  G    PPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 867 PPPXXXXGXXXXXPPPPPPP 926
           PPP    G     PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 867 PPPXXXXGXXXXXPPPPPPP 926
           PPP          PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 888 PXPXGGGXFXXXXPPPPPPP 829
           P P   G      PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 867 PPPXXXXGXXXXXPPPPPPP 926
           PPP    G     PPPPPPP
Sbjct: 752 PPPAPIMGG----PPPPPPP 767



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 888 PXPXGGGXFXXXXPPPPPPP 829
           P P  G       PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 888 PXPXGGGXFXXXXPPPPPPPXXXKKKK 808
           P P   G      PPPPPPP   KK+K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 869 PPPXGXGXXXXXPPPPPP 922
           PPP G       PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 867 PPPXXXXGXXXXXPPPPPPP 926
           PPP    G      PPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 867 PPPXXXXGXXXXXPPPPPPP 926
           PPP          PPPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 888 PXPXGGGXFXXXXPPPPPPPXXXKKKK 808
           P P     F     PPPPPP    KK+
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 882 PXGGGXFXXXXPPPPPPP 829
           P G G      PPPPPPP
Sbjct: 326 PIGNGSSNSSLPPPPPPP 343



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 872 PPXGXGXXXXXPPPPPPP 925
           PP G G      PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPP 342



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 849 PPPPPPPXXXKKKKXXXG 796
           PPPPPPP    + K   G
Sbjct: 311 PPPPPPPSRRNRGKPPIG 328



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 870 PPXXXXGXXXXXPPPPPPP 926
           PP          PPPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343



 Score = 23.4 bits (48), Expect(2) = 6.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 862 KXPPPXGXXGXXFXPPPPPP 921
           K P   G       PPPPPP
Sbjct: 324 KPPIGNGSSNSSLPPPPPPP 343



 Score = 21.0 bits (42), Expect(2) = 6.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 907 PPPPPP 924
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 849  PPPPPPPXXXKKK 811
            PPPPPPP   +KK
Sbjct: 1096 PPPPPPPAEVEKK 1108



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 849  PPPPPPPXXXKKKK 808
            PPPPPPP    +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 860 KKXPPPXGXGXXXXXPPPPPPP 925
           K   P  G       PPPPPPP
Sbjct: 291 KTQAPSSGDSANGGLPPPPPPP 312


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 898 FXPPPPPPP 924
           F PPPPPPP
Sbjct: 944 FPPPPPPPP 952


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,273
Number of Sequences: 5004
Number of extensions: 47470
Number of successful extensions: 457
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)