Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_A13
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   120   3e-28
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   120   3e-28
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   120   3e-28
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    92   8e-20
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   8.3  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  120 bits (289), Expect = 3e-28
 Identities = 63/90 (70%), Positives = 65/90 (72%)
 Frame = +2

Query: 296 TVALREIRRYQKSTELLIRKLAXQRLVRXIAXXFXTXLRFQSGXIRALQEASEGYLVGLF 475
           TVALREIRRYQKSTELLIRKL  QRLVR IA  F T LRFQS  I ALQEA E YLV LF
Sbjct: 46  TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLF 105

Query: 476 EDTNLCAIHAQRVNIMXXDISXGXTXXGER 565
           EDTNLCAIH +RV I   D+       GER
Sbjct: 106 EDTNLCAIHGKRVTIQPKDMQLARRLRGER 135



 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +1

Query: 214 KQLATKAARKSAPSTGGVKKPHRYRPG 294
           KQLA+KAARK+AP+TGGVKKPHRYRPG
Sbjct: 19  KQLASKAARKAAPATGGVKKPHRYRPG 45



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +3

Query: 159 MARTKQTARKSTGGKAPR*TTCYKSGAK 242
           MARTKQTARKSTGGKAPR     K+  K
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARK 28


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  120 bits (289), Expect = 3e-28
 Identities = 63/90 (70%), Positives = 65/90 (72%)
 Frame = +2

Query: 296 TVALREIRRYQKSTELLIRKLAXQRLVRXIAXXFXTXLRFQSGXIRALQEASEGYLVGLF 475
           TVALREIRRYQKSTELLIRKL  QRLVR IA  F T LRFQS  I ALQEA E YLV LF
Sbjct: 46  TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLF 105

Query: 476 EDTNLCAIHAQRVNIMXXDISXGXTXXGER 565
           EDTNLCAIH +RV I   D+       GER
Sbjct: 106 EDTNLCAIHGKRVTIQPKDMQLARRLRGER 135



 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +1

Query: 214 KQLATKAARKSAPSTGGVKKPHRYRPG 294
           KQLA+KAARK+AP+TGGVKKPHRYRPG
Sbjct: 19  KQLASKAARKAAPATGGVKKPHRYRPG 45



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +3

Query: 159 MARTKQTARKSTGGKAPR*TTCYKSGAK 242
           MARTKQTARKSTGGKAPR     K+  K
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARK 28


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  120 bits (289), Expect = 3e-28
 Identities = 63/90 (70%), Positives = 65/90 (72%)
 Frame = +2

Query: 296 TVALREIRRYQKSTELLIRKLAXQRLVRXIAXXFXTXLRFQSGXIRALQEASEGYLVGLF 475
           TVALREIRRYQKSTELLIRKL  QRLVR IA  F T LRFQS  I ALQEA E YLV LF
Sbjct: 46  TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLF 105

Query: 476 EDTNLCAIHAQRVNIMXXDISXGXTXXGER 565
           EDTNLCAIH +RV I   D+       GER
Sbjct: 106 EDTNLCAIHGKRVTIQPKDMQLARRLRGER 135



 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +1

Query: 214 KQLATKAARKSAPSTGGVKKPHRYRPG 294
           KQLA+KAARK+AP+TGGVKKPHRYRPG
Sbjct: 19  KQLASKAARKAAPATGGVKKPHRYRPG 45



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +3

Query: 159 MARTKQTARKSTGGKAPR*TTCYKSGAK 242
           MARTKQTARKSTGGKAPR     K+  K
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARK 28


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 92.3 bits (219), Expect = 8e-20
 Identities = 49/94 (52%), Positives = 63/94 (67%), Gaps = 6/94 (6%)
 Frame = +2

Query: 296 TVALREIRRYQKSTELLIRKLAXQRLVRXIAXXFXTX------LRFQSGXIRALQEASEG 457
           T ALREIR+YQ+ST+LLI++L   R+VR I+  F         LR+QS  ++ LQEA+E 
Sbjct: 26  TTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEA 85

Query: 458 YLVGLFEDTNLCAIHAQRVNIMXXDISXGXTXXG 559
           +LV LFEDTNLCAIHA+RV IM  D+       G
Sbjct: 86  FLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 702 WDGKNPVPPPL 670
           WDG NP+PP L
Sbjct: 202 WDGVNPIPPEL 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,097
Number of Sequences: 5004
Number of extensions: 44454
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)