Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_A13
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    26   0.53 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.5  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   8.6  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   8.6  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 744 EKXHXQKFLGATPXWDGKNPVPPPLRXK 661
           EK      L   P WDGK P P  L+ K
Sbjct: 17  EKEQMMNILMFLPSWDGKMPQPCILKPK 44


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 168 TKQTARKSTGGKAPR*TTCYKSGAKISAEHWWSQEATSLSPWXQWPF 308
           TK T  K TG  + +    YKS  +I+ E++   E + +  +  W +
Sbjct: 136 TKATL-KYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTY 181


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 225 YKSGAKISAEHWWSQEATSLSPWXQWPFVKFVV 323
           YKS  +I  E++   E T +  +  W +  F V
Sbjct: 145 YKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQV 177


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 225 YKSGAKISAEHWWSQEATSLSPWXQWPFVKFVV 323
           YKS  +I  E++   E T +  +  W +  F V
Sbjct: 149 YKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKV 181


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = -1

Query: 580 LXYLRPFPXXCXAX*NIXGHDVHTLGVNSTQVGV 479
           L YL P P  C     +     H    N T +GV
Sbjct: 77  LVYLEPSPPFCEKNPKLGILGTHGRQCNDTSIGV 110


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = -1

Query: 580 LXYLRPFPXXCXAX*NIXGHDVHTLGVNSTQVGV 479
           L YL P P  C     +     H    N T +GV
Sbjct: 78  LVYLEPSPPFCEKNPKLGILGTHGRQCNDTSIGV 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,186
Number of Sequences: 438
Number of extensions: 3277
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)