Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_A12
         (932 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    30   3.0  
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    28   9.2  
01_05_0746 + 24856362-24856710,24856799-24856986                       28   9.2  

>02_02_0664 -
           12747888-12747900,12748161-12748229,12748332-12748395,
           12749540-12749558,12749777-12749843,12749934-12749953,
           12750079-12750248,12751646-12751823
          Length = 199

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 122 RQWPGVHWSDQGTHSY 169
           R WPG+HWSD  T  Y
Sbjct: 51  RIWPGLHWSDSSTPLY 66


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 131 PGVHWSDQGTHSYS-CXXW*XXPYSXIMWS 217
           PG+HW++Q    YS C  W   P    MW+
Sbjct: 378 PGIHWNNQWMRGYSDCSHW-CLPGPIDMWN 406


>01_05_0746 + 24856362-24856710,24856799-24856986
          Length = 178

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 91  ITGQSXSRPWTSMARSPL 144
           ITG+S +RPW  M  +PL
Sbjct: 118 ITGESLARPWAGMTTTPL 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,917,433
Number of Sequences: 37544
Number of extensions: 210043
Number of successful extensions: 309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)