Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_A10
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 144 2e-35
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 140 2e-34
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 132 9e-32
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 36 0.011
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.92
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 3.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 6.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 6.5
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 26 8.6
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 144 bits (348), Expect = 2e-35
Identities = 71/138 (51%), Positives = 90/138 (65%)
Frame = +1
Query: 181 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 360
SK+ PES+LK + +++++ KK+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 361 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 540
+I L R+AR GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129
Query: 541 ATVNMLRIXEPYICLGIP 594
AT ML++ EPY+ GIP
Sbjct: 130 ATKEMLQVVEPYVTYGIP 147
Score = 80.2 bits (189), Expect = 4e-16
Identities = 39/89 (43%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Frame = +3
Query: 594 PTLRVSVS*YTKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYA 773
P L+ KRGF K++ QRI ++ N+I+E L K++I+ +EDLIHEI+TVG FK A
Sbjct: 147 PNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQA 206
Query: 774 SISCGPSN*TIQLGGWR-QKTIHYVDGGN 857
+ P + LGGWR +K H+++GG+
Sbjct: 207 ANFIWPFQLSSPLGGWRDRKFKHFIEGGD 235
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 140 bits (340), Expect = 2e-34
Identities = 67/131 (51%), Positives = 87/131 (66%)
Frame = +1
Query: 202 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 381
PES+LK + +++S+ KK+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 382 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 561
AR GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA ML+
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135
Query: 562 IXEPYICLGIP 594
+ EPY+ GIP
Sbjct: 136 VVEPYVTYGIP 146
Score = 84.2 bits (199), Expect = 2e-17
Identities = 38/78 (48%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Frame = +3
Query: 627 KRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASISCGPSN*TI 806
KRGF K++ QRIP++ N+I+E L K++I+ VEDLIHEI+TVG FK A+ P +
Sbjct: 157 KRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSS 216
Query: 807 QLGGWRQKTI-HYVDGGN 857
LGGWR++ H+++GG+
Sbjct: 217 PLGGWRERKFKHFIEGGD 234
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 132 bits (318), Expect = 9e-32
Identities = 62/131 (47%), Positives = 85/131 (64%)
Frame = +1
Query: 202 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 381
PE +LK ++ + ++ + K ++E FKRAE ++ YR +ER+ IRL R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 382 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 561
A+N+G+ +VP E KL FVIRI G+ + PK+RKVL+L RL +INN VFVR NKA MLR
Sbjct: 75 AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134
Query: 562 IXEPYICLGIP 594
I EPY+ GIP
Sbjct: 135 IVEPYVMYGIP 145
Score = 62.9 bits (146), Expect = 6e-11
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Frame = +3
Query: 627 KRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASISCGPSN*T- 803
KRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+ VG FK + P T
Sbjct: 156 KRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTP 215
Query: 804 IQLGGWRQKTIHYVDG 851
++ +K H+ +G
Sbjct: 216 VKHSLMEKKVKHFNEG 231
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 35.5 bits (78), Expect = 0.011
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = -2
Query: 863 YQVSPVDIMNGLLAPTTQLD-CSI*RATGNTRVLELFSNSEDLMDEVLNTDNVVFMEPLL 687
Y+ S D PT+Q+D +I R+T + RV F N +D + T + + E +L
Sbjct: 812 YENSAEDSPTATNTPTSQVDESNIFRSTDSPRVQPFFEN-KDPSKRFIGTPDYIAPEVIL 870
Query: 686 NN--AVGSDWYTLSTQLGESTFG 624
N SDW++L + E FG
Sbjct: 871 GNPGIKASDWWSLGCVVFEFLFG 893
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.92
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +1
Query: 283 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 399
+++K+ REI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 382 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 501
+ N+G YY G +AFV I G+ + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 316 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 417
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Frame = -3
Query: 826 WRQPPSWIVQFEG-PQEI-LAY---LNFSPT-VKISWMRSSTQI 713
WR P+W V +EG PQ L+Y L F PT ++I + +S I
Sbjct: 1232 WRSRPTWFVVWEGSPQNFALSYPYILAFEPTFIEIRHVETSELI 1275
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 900 PSS*XIVIWXSRLPSFPRRHNEWSSGANHPVGLFNLKGHRKYSR 769
P S + + +PSF RR + H L+N+ G+ KYSR
Sbjct: 194 PLSSLVKLLVQEMPSFTRR-----TILRHLRALYNIPGYEKYSR 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,714,756
Number of Sequences: 5004
Number of extensions: 75397
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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