Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_A10
(918 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 140 1e-33
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 135 5e-32
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 75 1e-13
10_08_0941 - 21717703-21718091,21718454-21718564,21718707-217187... 31 1.7
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 3.0
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 9.0
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 140 bits (339), Expect = 1e-33
Identities = 67/136 (49%), Positives = 91/136 (66%)
Frame = +1
Query: 187 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 366
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 367 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 546
+L R+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 547 VNMLRIXEPYICLGIP 594
+NMLR EPY+ G P
Sbjct: 127 INMLRRVEPYVAYGYP 142
Score = 87.0 bits (206), Expect = 2e-17
Identities = 39/77 (50%), Positives = 54/77 (70%)
Frame = +3
Query: 627 KRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASISCGPSN*TI 806
KRG+ KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HEI TVG FK A+ P
Sbjct: 153 KRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKA 212
Query: 807 QLGGWRQKTIHYVDGGN 857
LGG ++K HYV+GG+
Sbjct: 213 PLGGLKKKRNHYVEGGD 229
Score = 37.1 bits (82), Expect = 0.020
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Frame = +2
Query: 581 AWGYPHXKSVRELVYQTWIRQAEWTTYTNHFQQHC*EEAP*TQHYLC*GPHP*DLHC-WR 757
A+GYP+ KSVREL+Y+ + + EE +C ++
Sbjct: 138 AYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVI-EEGLGKHDIICIEDLVHEIMTVGP 196
Query: 758 KVQVREYFLWPFKLNNPTGWLAPEDHSLCRRGKLGNREXQI 880
+ FLWPFKL P G L + + G GNRE I
Sbjct: 197 HFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYI 237
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 135 bits (326), Expect = 5e-32
Identities = 63/132 (47%), Positives = 89/132 (67%)
Frame = +1
Query: 199 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 378
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 379 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 558
+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 559 RIXEPYICLGIP 594
R EPY+ G P
Sbjct: 130 RRVEPYVAYGYP 141
Score = 81.4 bits (192), Expect = 9e-16
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Frame = +3
Query: 627 KRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVEDLIHEIFTVGEKFKYASISCG 788
KRG+ KL+ QRIP+T+N ++E+ L KH+IIC+EDL+HEI TVG FK A+
Sbjct: 152 KRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVGPHFKEANNFLW 211
Query: 789 PSN*TIQLGGWRQKTIHYVDGGN 857
P LGG ++K HYV+GG+
Sbjct: 212 PFKLKAPLGGLKKKRNHYVEGGD 234
Score = 36.7 bits (81), Expect = 0.026
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Frame = +2
Query: 581 AWGYPHXKSVRELVYQTWIRQA--EWTTYTNHF---QQHC*EEAP*TQHYLC*GPHP*DL 745
A+GYP+ KSVREL+Y+ + + TN+ + C + +C ++
Sbjct: 137 AYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEI 196
Query: 746 HC-WRKVQVREYFLWPFKLNNPTGWLAPEDHSLCRRGKLGNREXQI 880
+ FLWPFKL P G L + + G GNRE I
Sbjct: 197 MTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYI 242
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 74.5 bits (175), Expect = 1e-13
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Frame = +1
Query: 172 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 351
+E +++LP V E+VLK + +R + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 352 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 522
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 523 FVRLNKATVNMLRIXEPYICLGIP 594
F++ AT+ L + EP+I G P
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFP 144
Score = 54.8 bits (126), Expect = 9e-08
Identities = 24/50 (48%), Positives = 35/50 (70%)
Frame = +3
Query: 627 KRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYAS 776
K+G L + P+TSN ++EK L ++ IIC+EDL+HEI +VG F+ AS
Sbjct: 155 KKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREAS 204
>10_08_0941 -
21717703-21718091,21718454-21718564,21718707-21718791,
21718885-21719106,21719804-21720292,21722206-21722322
Length = 470
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 814 PSWIVQF-EGPQEILAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEV 668
P W + EGP I AY +SP + S Q+ L +WSL +T + V
Sbjct: 80 PDWTCKIDEGPAGI-AYARWSPDSRHILTTSEFQLRLTVWSLVNTACIHV 128
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 265 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 405
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 410 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 508
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,438,196
Number of Sequences: 37544
Number of extensions: 501970
Number of successful extensions: 1152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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