Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_A08
         (951 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    94   1e-19
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    33   0.44 
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116...    30   3.1  
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    29   4.1  
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    29   7.2  
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239...    28   9.5  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 59/140 (42%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
 Frame = +3

Query: 234 W*REHRXDIQIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLK 407
           W  +   D+ I G NPSAE    DEG D      VDIV   RL E   F DKK +  ++K
Sbjct: 35  WVVQGAIDVDI-GANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMK 92

Query: 408 DYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRD 587
            Y+K L AKL+    ++ E FK N+    K +LG+ K+LQFF GESM  DG +    Y+ 
Sbjct: 93  RYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK- 148

Query: 588 FDGTQIPIMMFFKHGLEEEK 647
            DG   P  ++F HGL+E K
Sbjct: 149 -DGATDPTFLYFSHGLKEVK 167



 Score = 35.9 bits (79), Expect = 0.047
 Identities = 13/38 (34%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +2

Query: 134 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTR 244
           M +Y+D++TGDE+ SD++  + ++  +++EV G+ V +
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQ 38


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = -2

Query: 578 FHHGNHAITIHGLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 444
           FHH  H   ++  PSK+L    ++L+     FH F ++C++Y  + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292


>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
            1164082-1164240,1164663-1164797,1165116-1165268,
            1165358-1165479,1165599-1166541,1166677-1166728,
            1166873-1167963,1168058-1168384,1168479-1168559,
            1168649-1168717,1168809-1168937,1169038-1169121,
            1169210-1169275
          Length = 1321

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 375  GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 548
            G +K  TL  L++Y+  +V A L+    +Q+E FK  +NKV        K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194

Query: 549  D 551
            +
Sbjct: 1195 E 1195


>09_02_0062 -
           3742857-3743045,3744641-3744916,3745933-3745992,
           3746554-3748102,3748183-3748418
          Length = 769

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 243 EHRXDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKK 386
           + +  + I   N S EE +E  ++A    VD+ LN   +E   +G+KK
Sbjct: 706 QEKFSVSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752


>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 348 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 527
           H L+   A  D  S +L  ++++   V   +E+A  Q+EV K  +    K+I     EL 
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236

Query: 528 FFTGE 542
             + E
Sbjct: 237 VLSKE 241


>02_01_0336 +
           2397648-2397812,2398367-2398441,2398860-2398975,
           2399155-2399269,2399360-2399488,2399809-2399856,
           2400369-2400448,2400628-2400824,2400916-2401202,
           2401281-2401307,2401353-2401538,2401633-2402094,
           2402201-2402350,2402612-2402687,2402851-2402978,
           2403244-2403435,2403559-2403690,2403767-2403889,
           2404128-2404346,2404518-2404679
          Length = 1022

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 450 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 352
           APS  +   + SYSL GT   +   RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,322,268
Number of Sequences: 37544
Number of extensions: 355429
Number of successful extensions: 812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)