Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_A08
         (951 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 538 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 440
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 538 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 440
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 147  RTLSLVMRCSLTLTK*NWSMKLFTK*PVGW*REHRXDIQIEGFNPSAEEADEGTDSAVES 326
            +TL+ V++  +   K N++  L     +G   +   D+++EGF       D  T S  +S
Sbjct: 1018 KTLNEVLQADMNALK-NFNQPLLVNDQLG---QLYLDLEVEGFETKLVLEDGITSSGSDS 1073

Query: 327  G 329
            G
Sbjct: 1074 G 1074


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,741
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)