Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_A03
         (1071 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   4.8  
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    29   8.3  
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    29   8.3  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -1

Query: 996  GGXGGXXPPPPPXGGXXXXKXXXXXXXXXPPPXP 895
            GG GG   PPPP G               PPP P
Sbjct: 1155 GGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPP 1188


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 996 GGXGGXXPPPPPXGG 952
           GG GG  PPPPP  G
Sbjct: 54  GGGGGWPPPPPPLSG 68


>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 953 PPXGGGGGXXPPXP 994
           PP GGGGG  PP P
Sbjct: 95  PPQGGGGGYNPPSP 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,775,046
Number of Sequences: 37544
Number of extensions: 218917
Number of successful extensions: 679
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3187874508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)