Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_A02
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 31 0.23
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 31 0.30
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.93
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 1.6
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 28 2.1
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.8
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 3.7
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 4.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 6.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.5
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 26 8.6
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 31.1 bits (67), Expect = 0.23
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 368 QNN-DSAAEEMKIFDSDTETGLNKITEMPVQKEDTSEIKCTSXQELEQFYSNSDAHVKEN 544
QN+ D + +FD T + E P + E E+K T Q+ + Y+ ++A N
Sbjct: 222 QNSLDDHLVDKVLFDYLVRTYHLYLDESPEESEPEKELKATFNQQNQDLYNQTEALKSTN 281
Query: 545 TEILN 559
E++N
Sbjct: 282 EELIN 286
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 30.7 bits (66), Expect = 0.30
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = +2
Query: 317 NSQNITTEISDQNINMLQNNDSAAEEMKIFDSDTETGL--NKITE-----MPVQKEDTSE 475
+SQN T E + N L ND EE+ + L N++ E M KE +E
Sbjct: 435 HSQNQTEEQGNSNAPELNKNDYEGEEITVSQKSPSPSLPPNELNEPEPDDMDGYKEAFNE 494
Query: 476 IKCTSXQELEQFYSNSDAHVKENTEILNITXNKII 580
++C S ++ + N + + EN ++++ II
Sbjct: 495 LRCLSY--VQCLFENITSSLNENLYMVDMLKTLII 527
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.93
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Frame = +2
Query: 173 TKDXDNEVKPETIPISTKESEVLDQFEXMAEITDSTGETLXLIDTNNENSQN-ITTEISD 349
T + D++++ T LD+ E +D G T + + NENS + + D
Sbjct: 3926 TLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLD 3985
Query: 350 QNINMLQNNDSAAEEMKIFDSDTETGLNKITEMP-VQKEDTSEIKCTSXQELEQFYSNSD 526
+ +N + + S + K++D E L + + Q +E S ++ + + D
Sbjct: 3986 EEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKD 4045
Query: 527 AHVKENTE 550
KE+ E
Sbjct: 4046 RQEKEDEE 4053
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 594 STSNGGDNIEDXSQREISAQSKRKFIECTEELPVKKXKSELIHCK 728
S+ +G N + + E+SAQS E VK S IH K
Sbjct: 313 SSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDK 357
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.9 bits (59), Expect = 2.1
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Frame = +2
Query: 242 DQFEXMAEITDSTGET-LXLIDT---NNENSQNITTEISDQNINMLQNNDSAAEEMKIFD 409
D+ E + S E L +DT N++ +N + S + NND A ++ + +
Sbjct: 120 DKLENEGSVGSSIDENELVDLDTLLDNDQPEKNESNTASTIRPPWIGNNDHATDKENLLE 179
Query: 410 SDTETGLNKITEMPVQKEDTSEIKCTSXQELEQFYSNSDAHVKENTEILNITXNKIIENG 589
SD + + +E+ ++ +E S E+E S+ D ++++ N+ N I+
Sbjct: 180 SDASSSNDSESELTDSADNMNE--SDSESEIESSDSDHDDGENSDSKLDNL-RNYIVSLN 236
Query: 590 Q 592
Q
Sbjct: 237 Q 237
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 449 PVQKEDTSEIKCTSXQELEQFYSNSDAHVKENTEI 553
P +KEDT++++ T Q+LEQ +S + + +K + I
Sbjct: 125 PAEKEDTTDVEDT--QKLEQKHSTTPSSLKMKSSI 157
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +2
Query: 347 DQNINMLQNNDSAAEEMKIFDSDTETGLNKITEMPVQKEDTSEIKCTSXQELEQFYSNSD 526
D+ +L+ +++ +K+ E L + VQ E T+ + T ELE N +
Sbjct: 807 DEFTPILEKSENDYNGVKLECEQLEGELQNHQQSLVQGESTTSLIKTEIAELELSLVNEE 866
Query: 527 AHVKENTEILNITXNK 574
+ K+ TE++ I K
Sbjct: 867 HNRKKLTELIEIESAK 882
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 4.9
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 323 QNITTEISDQNINMLQ-NNDSAAEEMKIFDSDTETGLNKITEMPVQKEDTSEIKCTSXQE 499
+++T+E SD I + N+S ++ + D DTE +N + +P +E TS Q
Sbjct: 342 ESLTSEKSDTLITKSELANESEEDDFIVDDEDTEVMMNARSLLP------AEFSMTSHQG 395
Query: 500 LEQFYSN 520
L+ + N
Sbjct: 396 LKAHFRN 402
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 6.5
Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Frame = +2
Query: 149 ATXELSELTKDXDNEVKPETIPISTKESEVLDQFEXMAEITDSTGETLXLIDTNNENSQN 328
A ++ L +D + +VK + ++ S+ + + +S + E Q
Sbjct: 186 ALDQIKGLKRDQETQVKVDQATLTHYRSDKERAEKIELRVHESLKRISCIRSKVEELDQE 245
Query: 329 IT--TEISDQNINMLQNNDSAAEEMKIFDSDTETGLNKITEMPVQKEDTSEIKCTSXQEL 502
IT + D+ + + ++ +S ++ I ++ Q T E S ++L
Sbjct: 246 ITETARLQDELFKSTEEYEQQMITIRHLESQSDIINTTINDLKSQMTITDE----SSEDL 301
Query: 503 EQFYSNSDAHVKENTEI 553
E+ +SN VKE E+
Sbjct: 302 EKLHSNFAEKVKEEQEL 318
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +2
Query: 338 EISDQNINM-LQNNDSAAEEMKIFDSDTET---GLNKITEMPVQKEDTSEIKCTSXQELE 505
EI D + + +N +++K S ++ LN++ +PV + T + QE++
Sbjct: 1211 EIMDNKYELTILDNRGLNQQVKSLQSTVDSLQLELNRLQSLPVSNDQTDTPIISGSQEVQ 1270
Query: 506 QFYSNSDAHVKEN 544
Y ++ K+N
Sbjct: 1271 LLYESNSVLRKDN 1283
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 8.6
Identities = 20/122 (16%), Positives = 54/122 (44%)
Frame = +2
Query: 191 EVKPETIPISTKESEVLDQFEXMAEITDSTGETLXLIDTNNENSQNITTEISDQNINMLQ 370
+++P + +V + + AEI +S G+ I+ + Q + Q I +
Sbjct: 194 DIRPPESVVMAMHQQVSAERQKRAEILESEGKRQAAINVAEGDKQAEILDSEGQKIKTIN 253
Query: 371 NNDSAAEEMKIFDSDTETGLNKITEMPVQKEDTSEIKCTSXQELEQFYSNSDAHVKENTE 550
+ + A+ ++ S T +G+ + + ++K++ ++ S +Q+ +N K +
Sbjct: 254 SALAEAQAIREKASATASGIAVLAD-SIKKQEHG-LEAVSLYIAQQYITNFGKLAKASNS 311
Query: 551 IL 556
++
Sbjct: 312 MI 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,261
Number of Sequences: 5004
Number of extensions: 39783
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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