Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P23
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   156   4e-39
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   156   4e-39
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    33   0.042

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  156 bits (379), Expect = 4e-39
 Identities = 71/109 (65%), Positives = 86/109 (78%)
 Frame = +3

Query: 84  QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 263
           Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 264 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 410
           GRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +1

Query: 424 GDIVTIGECRPLSKTVRFNVLKV 492
           GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  156 bits (379), Expect = 4e-39
 Identities = 71/109 (65%), Positives = 86/109 (78%)
 Frame = +3

Query: 84  QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 263
           Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 264 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 410
           GRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +1

Query: 424 GDIVTIGECRPLSKTVRFNVLKV 492
           GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 421 IGDIVTIGECRPLSKTVRFNVLKV 492
           +GD VTI  CRP S T RF ++K+
Sbjct: 51  VGDAVTIQPCRPRSATKRFEIIKI 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,959
Number of Sequences: 5004
Number of extensions: 43630
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)