Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P22
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    67   3e-12
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    27   2.7  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    27   4.7  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    27   4.7  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   8.3  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.3  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   8.3  

>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
 Frame = +1

Query: 124 KMPFYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDYVVTQG----GNKGP 291
           K  +YAVA+GR +GI+ TW +   QVKG+ G +YKKFD+   AQ++  T+G     + GP
Sbjct: 5   KRAYYAVARGRNTGIYSTWDEASDQVKGYGGNRYKKFDSYEAAQEFCRTEGSRYSSSSGP 64

Query: 292 PSKPGTSFKVGNKKTASNNLKRPYS 366
             +  TS+      ++S+N    +S
Sbjct: 65  YRRSTTSYGYSPYSSSSSNYSARHS 89



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +1

Query: 658 VYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSG-RATNNCGEIQAATKAI 816
           VY DG+   NG+  A AG GV++G+    N+S P++G   TNN  E+QA   A+
Sbjct: 126 VYADGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILAL 179


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 238 TINQAQDYVVTQGGNKGPPSKPGTSFKVGNKK 333
           TI   Q Y+V+QG +K   +   TSF   NKK
Sbjct: 476 TIEALQQYIVSQGPSKNILTLDWTSFWATNKK 507


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 487 MDDIEARLK-GFQKGVDKIIKKNSAKPERKTIMIDPPEPKKQRQDNNDFETD 639
           +D+ +  L  GF+  + KI+  +  +P+R+T+M     PK+ ++   D+  D
Sbjct: 275 LDEADRMLDMGFEPQIRKIV--DQIRPDRQTVMFSATWPKEVQRLARDYLND 324


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 514 GFQKGVDKIIKKNSAKPERKTIMIDPPEPKKQRQD 618
           G  KG + II   S +P   +   DP   +KQRQ+
Sbjct: 368 GHAKGFESIIVPGSGEPNYDSYENDPFASRKQRQE 402


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 544 KKNSAKPERKTIMIDPPEPKKQRQDNNDFE 633
           KK+  KPE  ++  D   PK    D+ D E
Sbjct: 167 KKSHPKPEDDSVFFDDERPKHHEFDDEDRE 196


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 619 NNDFETD--PDGFVQVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNN 783
           NN F TD      V V ++ +CS N  S +      YW    SL+ S   +  +++N
Sbjct: 319 NNYFMTDVKSSSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSN 375


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 107 LFTHNLVSFFKKHSSEKYIQN--LKEFPISRQRXW 9
           +    +VS+ ++    K ++N  LK++ ISRQR W
Sbjct: 404 MLQQKIVSYLEEKKLAKRVKNYRLKDWLISRQRFW 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,538
Number of Sequences: 5004
Number of extensions: 69016
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)