Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_P22
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0524 - 4560471-4560572,4560864-4560971,4561413-4561556,456... 37 0.019
05_05_0207 + 23272777-23272977,23273831-23275330 31 1.2
03_04_0035 - 16685674-16686376,16686594-16686640 31 1.6
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451... 30 2.8
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 30 2.8
12_02_1218 - 27088206-27088214,27088577-27088643,27088755-270888... 29 6.6
11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600 29 6.6
10_01_0130 + 1540412-1541173 28 8.7
09_06_0263 - 21923991-21924614,21924722-21925438 28 8.7
04_04_0200 - 23529497-23531938,23532586-23533720,23534272-235344... 28 8.7
>08_01_0524 -
4560471-4560572,4560864-4560971,4561413-4561556,
4561655-4561747,4561906-4561968,4562086-4562133,
4562677-4562835,4563251-4563589
Length = 351
Score = 37.1 bits (82), Expect = 0.019
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 130 PFYAVAKGRTSGIFMTWADCEAQVKGF----SGAKYKKFDTINQAQDYVVTQG 276
PFY V KG GI+ + +DC+AQV S YK + + ++Y+ +G
Sbjct: 87 PFYVVRKGDVIGIYKSLSDCQAQVSNSVCDPSVTVYKGYSLRKETEEYLAARG 139
>05_05_0207 + 23272777-23272977,23273831-23275330
Length = 566
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/100 (20%), Positives = 49/100 (49%)
Frame = +1
Query: 475 LTKQMDDIEARLKGFQKGVDKIIKKNSAKPERKTIMIDPPEPKKQRQDNNDFETDPDGFV 654
L +++++ A ++ +K +++ +K+ + + K + + + Q ++ + V
Sbjct: 361 LLERVEEAMAAVETSRKALEEALKREESTNKAKLVAEESLRKLRSEQIIQNWRPTGNSSV 420
Query: 655 QVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRA 774
+ T A +A + +AG G+Y +G SL + P S +A
Sbjct: 421 KFKTSAATTAAVVAHRRAGSGIYDVNGLSLVTATPKSTKA 460
>03_04_0035 - 16685674-16686376,16686594-16686640
Length = 249
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 562 PERKTIMIDPPEPKKQRQDNNDFETDPDGFVQVYTDGACSANGR 693
PE +T+++ P K R +NN G V V GACS GR
Sbjct: 78 PEPRTVVVSPIRTKALRCNNN----SSSGIVVVQQAGACSHGGR 117
>04_04_1247 -
32043776-32043880,32044296-32044505,32044595-32045101,
32045362-32045583,32046054-32046184,32046737-32047745,
32047830-32047904,32047995-32048066,32048153-32048328,
32048494-32048646,32048739-32049234
Length = 1051
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Frame = +1
Query: 598 PKKQRQDNNDFETDPDGFVQVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSG-RA 774
P +DN DF+ DG QV N S GL D + LN + +S R
Sbjct: 16 PYSDTEDNLDFDDPNDGVNQVVLHNTAFGNNSSELLVGL----DDDNWLNNTHALSSHRP 71
Query: 775 TNNCGEIQAATKAIRQALQNGXQNY 849
N +I ++ + QN Y
Sbjct: 72 AENRSDIIESSSGVNTDCQNSAWQY 96
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 487 MDDIEARLK-GFQKGVDKIIKKNSAKPERKTIMIDPPEPKKQRQDNNDFETDP 642
+D+ + L GF+ + KI+K+ +P+R+T+M PK+ R+ +D ++P
Sbjct: 332 LDEADRMLDMGFEPQIRKIVKQ--VQPKRQTLMFTATWPKEVRKIASDLLSNP 382
>12_02_1218 -
27088206-27088214,27088577-27088643,27088755-27088821,
27088934-27089054,27089272-27089351,27089574-27089686,
27090305-27090420,27090507-27090575,27090684-27090758,
27090836-27090880,27091100-27091187,27091488-27091570,
27091655-27091705,27091848-27091905,27092019-27092201,
27092385-27092546,27092713-27093029
Length = 567
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 730 LPSTHPSLLSHYSDHLLNMLRQYTPVQSHQGQFQN 626
+PS +S H++N+ QYTP + +G +Q+
Sbjct: 442 IPSVLDKTISPPGQHVINLFVQYTPYKLSEGSWQD 476
>11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600
Length = 447
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = +1
Query: 643 DGFVQVYTDGACSA------NGRSSAKAGLGVYWGDGHSLNVSEPVSGRA 774
+G++++ DGA S G SS++ + V G G+ NVSEP A
Sbjct: 36 EGYLKINVDGAFSGIAQNLVAGASSSEIAIAVSAGSGNLQNVSEPSQAEA 85
>10_01_0130 + 1540412-1541173
Length = 253
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +1
Query: 529 VDKIIKKNSAKPERKTIMIDPPEPKKQRQDNNDFETDPDGFVQVYTDGACSANGRSSAKA 708
V++ K P R++ PP QR+ D+ G V DG C+ N RS+ +
Sbjct: 149 VERDAPKPPPPPRRQSPAPPPPRQHSQRRATRDY-----GEEHVRHDGCCTENYRSTYRR 203
Query: 709 G 711
G
Sbjct: 204 G 204
>09_06_0263 - 21923991-21924614,21924722-21925438
Length = 446
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 133 FYAVAKGRTSGIFMTWADCEAQVKG 207
F A +KGR++G M W+ C Q KG
Sbjct: 390 FGASSKGRSNGRAMMWSACLGQCKG 414
>04_04_0200 -
23529497-23531938,23532586-23533720,23534272-23534463,
23535527-23535570
Length = 1270
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 466 NTILTKQMDDIEARLKGFQKGVDKIIKKNSAKPERKTIMID 588
NT L MD + ++ + V+K+I K KP +K +M+D
Sbjct: 288 NTTLNAHMDQCLS-VESNTEPVEKVILKPKVKPRKKRLMVD 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,509,774
Number of Sequences: 37544
Number of extensions: 413422
Number of successful extensions: 1133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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