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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P22
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-3|AAO91712.1|  251|Caenorhabditis elegans Rnase h protein...    76   4e-14
U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    46   4e-05
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    46   4e-05
U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical pr...    42   4e-04
U41994-4|ABE73335.1|   41|Caenorhabditis elegans Rnase h protein...    41   0.001
Z70037-5|CAA93880.1|  648|Caenorhabditis elegans Hypothetical pr...    37   0.022
Z49069-4|CAA88868.1|  648|Caenorhabditis elegans Hypothetical pr...    37   0.022
Z81461-7|CAB03838.1|  139|Caenorhabditis elegans Hypothetical pr...    36   0.029
Z49913-5|CAA90146.1|  404|Caenorhabditis elegans Hypothetical pr...    33   0.27 
U23529-4|AAK39164.2|  545|Caenorhabditis elegans Hypothetical pr...    33   0.36 
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    30   2.6  
AY347577-1|AAP97871.1|  322|Caenorhabditis elegans COLlagen stru...    29   3.4  
AC006665-1|AAF39908.1|  322|Caenorhabditis elegans Dumpy : short...    29   3.4  
Z92803-4|CAB54267.2|  303|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z92803-3|CAB07243.2|  301|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z92803-2|CAB07241.1|  175|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U50067-5|AAY86219.1|  306|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U40419-8|AAA81428.3|  673|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF123574-1|AAD21197.1|  175|Caenorhabditis elegans chromo-domain...    29   4.5  
AF123573-1|AAD21196.1|  301|Caenorhabditis elegans chromo-domain...    29   4.5  
Z49070-4|CAE45098.2|  528|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>U41994-3|AAO91712.1|  251|Caenorhabditis elegans Rnase h protein
           1.0, isoform c protein.
          Length = 251

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 42/103 (40%), Positives = 55/103 (53%)
 Frame = +1

Query: 523 KGVDKIIKKNSAKPERKTIMIDPPEPKKQRQDNNDFETDPDGFVQVYTDGACSANGRSSA 702
           K V   +  +SA  +R        E KK + +    + +      VYTDGACS+NG  +A
Sbjct: 60  KPVTPAVSTSSATRKRTHEGTKFTEAKKMKTEEEVIDPEFANAPVVYTDGACSSNGTKNA 119

Query: 703 KAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQALQ 831
           KAG GVYWGD    N   PV G  TNN GE+ A  KAI +A++
Sbjct: 120 KAGWGVYWGDDSEDNEFGPVYGAPTNNRGELIAVQKAIEKAIE 162



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +1

Query: 133 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDYVVTQGGNKG-PPSKPGT 309
           +YAVA+G+  GI+ TW +C+ Q+ GF  A++KKF T  +A+ +V       G  P  P  
Sbjct: 7   YYAVARGKQVGIYRTWNECKTQIDGFQNARFKKFATEAEARKFVADNMSVPGSKPVTPAV 66

Query: 310 SFKVGNKKTASNNLK 354
           S     +K      K
Sbjct: 67  STSSATRKRTHEGTK 81


>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +1

Query: 133 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDYV 264
           FY VA G   G+F  WA+ + Q+  F    YKKF+T  +AQ YV
Sbjct: 4   FYGVAHGFKRGVFTEWAEAKKQIDKFPQPVYKKFETEEEAQKYV 47



 Score = 35.1 bits (77), Expect = 0.068
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 133 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDY 261
           +YAVA+G + G+F  + + +  +K +    +KK+ T+ +A  Y
Sbjct: 67  YYAVARGHSVGVFTNYNEVKEHIKNYPQPLHKKWSTLEEAIAY 109


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +1

Query: 133 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDYV 264
           FY VA G   G+F  WA+ + Q+  F    YKKF+T  +AQ YV
Sbjct: 4   FYGVAHGFKRGVFTEWAEAKKQIDKFPQPVYKKFETEEEAQKYV 47



 Score = 35.1 bits (77), Expect = 0.068
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 133 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDY 261
           +YAVA+G + G+F  + + +  +K +    +KK+ T+ +A  Y
Sbjct: 67  YYAVARGHSVGVFTNYNEVKEHIKNYPQPLHKKWSTLEEAIAY 109


>U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical
           protein ZK1290.6 protein.
          Length = 507

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 631 ETDPDGFVQVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGR-ATNNCGEIQAAT 807
           E  P G + +YTDG+      +S   G+G++ G GH LN S+ + G    NN  E  A  
Sbjct: 320 EMFPKGTLVMYTDGSYLKRPPTS---GIGIFVGPGHELNRSQRIRGPIQDNNYAEFIAVR 376

Query: 808 KAIRQALQNGXQNY 849
            A++ AL+N  +NY
Sbjct: 377 TALQNALKN--ENY 388


>U41994-4|ABE73335.1|   41|Caenorhabditis elegans Rnase h protein
           1.0, isoform d protein.
          Length = 41

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +1

Query: 133 FYAVAKGRTSGIFMTWADCEAQVKGFSGAK 222
           +YAVA+G+  GI+ TW +C+ Q+ GF  A+
Sbjct: 7   YYAVARGKQVGIYRTWNECKTQIDGFQNAR 36


>Z70037-5|CAA93880.1|  648|Caenorhabditis elegans Hypothetical
           protein K12D12.5 protein.
          Length = 648

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +1

Query: 658 VYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQALQNG 837
           VY  GAC   G ++A A   V W  G       PV+G   N   ++ A   A++QA Q G
Sbjct: 518 VYVGGACRGRGYANALAVYSVVWPIGEYGCSQGPVTGIVNNIRAKLAAVKSALQQAEQLG 577

Query: 838 XQNYLL 855
             + ++
Sbjct: 578 IASLII 583



 Score = 35.9 bits (79), Expect = 0.039
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +1

Query: 658 VYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQAL 828
           VY  G   + G S   A  GV WG GH+ N   PV+G  T+   E+ A  + +  AL
Sbjct: 16  VYLAGTLISIG-SKPSARYGVCWGAGHAKNEGGPVAGSQTSLRAELTALRRTLEIAL 71



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 676 CSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQALQNGXQN-YL 852
           C   G+  A A  GVYWG     N +  V    T+    + A   A+R A  +G +  + 
Sbjct: 172 CEKEGKCDALAKYGVYWGQDDHRNEAGLVEDGQTSLRAIMCAVRSALRTAAMHGLKRVHF 231

Query: 853 LHRL*ILINSVTK 891
           L R   +IN + K
Sbjct: 232 LTRRIDIINIIKK 244



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 3/110 (2%)
 Frame = +1

Query: 505 RLKGFQKGVDKIIKKNSAKPER---KTIMIDPPEPKKQRQDNNDFETDPDGFVQVYTDGA 675
           R +   +G  K +KK   + ER   + +MI+        +     E   D          
Sbjct: 291 RAEAITRGATKKLKKRDNEYERLDRQLLMIESSSSASSPESQPKIENIGDKCPTAVILNL 350

Query: 676 CSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQA 825
                   +K    VYWG+    N   PV+ RA     ++ AA  A+++A
Sbjct: 351 LVRPKFGHSKVSYAVYWGENDEKNERGPVNMRAHAFQADLYAAMCALKKA 400


>Z49069-4|CAA88868.1|  648|Caenorhabditis elegans Hypothetical
           protein K12D12.5 protein.
          Length = 648

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +1

Query: 658 VYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQALQNG 837
           VY  GAC   G ++A A   V W  G       PV+G   N   ++ A   A++QA Q G
Sbjct: 518 VYVGGACRGRGYANALAVYSVVWPIGEYGCSQGPVTGIVNNIRAKLAAVKSALQQAEQLG 577

Query: 838 XQNYLL 855
             + ++
Sbjct: 578 IASLII 583



 Score = 35.9 bits (79), Expect = 0.039
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +1

Query: 658 VYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQAL 828
           VY  G   + G S   A  GV WG GH+ N   PV+G  T+   E+ A  + +  AL
Sbjct: 16  VYLAGTLISIG-SKPSARYGVCWGAGHAKNEGGPVAGSQTSLRAELTALRRTLEIAL 71



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 676 CSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQALQNGXQN-YL 852
           C   G+  A A  GVYWG     N +  V    T+    + A   A+R A  +G +  + 
Sbjct: 172 CEKEGKCDALAKYGVYWGQDDHRNEAGLVEDGQTSLRAIMCAVRSALRTAAMHGLKRVHF 231

Query: 853 LHRL*ILINSVTK 891
           L R   +IN + K
Sbjct: 232 LTRRIDIINIIKK 244



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 3/110 (2%)
 Frame = +1

Query: 505 RLKGFQKGVDKIIKKNSAKPER---KTIMIDPPEPKKQRQDNNDFETDPDGFVQVYTDGA 675
           R +   +G  K +KK   + ER   + +MI+        +     E   D          
Sbjct: 291 RAEAITRGATKKLKKRDNEYERLDRQLLMIESSSSASSPESQPKIENIGDKCPTAVILNL 350

Query: 676 CSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQA 825
                   +K    VYWG+    N   PV+ RA     ++ AA  A+++A
Sbjct: 351 LVRPKFGHSKVSYAVYWGENDEKNERGPVNMRAHAFQADLYAAMCALKKA 400


>Z81461-7|CAB03838.1|  139|Caenorhabditis elegans Hypothetical
           protein C04F12.9 protein.
          Length = 139

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 661 YTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPV-SGRATNNCGEIQAATKAIRQA 825
           YTDG+   NG+  ++ G GV+     S NVS     G  TNN  E++A   A + A
Sbjct: 6   YTDGSALGNGQQGSRGGYGVHVPSDTSKNVSGSYPHGPQTNNRYELEAIKHATQMA 61


>Z49913-5|CAA90146.1|  404|Caenorhabditis elegans Hypothetical
           protein ZK938.7 protein.
          Length = 404

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = +1

Query: 655 QVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVS-GRATNNCGEIQA---ATKAIR 819
           +VYTDG+   NG+  A+ G  + +    SL+  + +  G+ TNN  E+ A   AT+ +R
Sbjct: 7   EVYTDGSTVNNGKRGARGGWAIVFPFDRSLDEYDFMKVGKQTNNVYELTAIYEATEVVR 65


>U23529-4|AAK39164.2|  545|Caenorhabditis elegans Hypothetical
           protein C15B12.4 protein.
          Length = 545

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 661 YTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQALQNGX 840
           +++G   A+G  +   G G    DG  +N +  +    + N G I A TKA+   ++NG 
Sbjct: 412 FSNGVGGASGNENNVTGSGFVELDGDIMNGNSSMQAFGSGN-GPIAADTKAVLNLMENGV 470

Query: 841 Q-NYLLH 858
           Q N  +H
Sbjct: 471 QKNRTIH 477


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 487 MDDIEARLK-GFQKGVDKIIKKNSAKPERKTIMIDPPEPKKQRQDNNDFETD 639
           +D+ +  L  GF+  + KII     +P+R+T+M     PK+ R   +DF+ D
Sbjct: 282 LDEADRMLDMGFEPQIKKII--GQIRPDRQTLMFSATWPKEVRALASDFQKD 331


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +1

Query: 76  LKKETRLCVNRAFTYPKMPFYAVAK--GRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQ 249
           L ++ R+ +   FT+  +PF+A AK   R   + MTW      + G SGA++ ++    Q
Sbjct: 690 LLQQVRMQIRNVFTFMFVPFHAGAKMMSRKCHVLMTW------ICGSSGAQFGRWTP--Q 741

Query: 250 AQDY 261
           A+ Y
Sbjct: 742 AEQY 745


>AY347577-1|AAP97871.1|  322|Caenorhabditis elegans COLlagen
           structural gene, probablya critical component of the
           embryonically derived outerlayer of the L1 cuticle (31.8
           kD) (col-59) protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 271 QGGNKGPPSKPGTSFKVGNKKTASNNLK 354
           Q G  GPP  PG   K GN  +A N+ K
Sbjct: 131 QQGKAGPPGPPGDDGKDGNDGSAGNDAK 158


>AC006665-1|AAF39908.1|  322|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 14 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 271 QGGNKGPPSKPGTSFKVGNKKTASNNLK 354
           Q G  GPP  PG   K GN  +A N+ K
Sbjct: 131 QQGKAGPPGPPGDDGKDGNDGSAGNDAK 158


>Z92803-4|CAB54267.2|  303|Caenorhabditis elegans Hypothetical
           protein K01G5.2c protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 466 NTILTKQMDDIEARLKGFQKGVDKIIKKNSAKPERKTIMIDPPEPKKQRQDNN 624
           N    + +D+ E   + F K    I K++S KPE      DP E K ++++ N
Sbjct: 56  NLQCVEMLDEFE---REFSKREKPIRKRHSQKPEPSEDQADPEEDKDEKKETN 105


>Z92803-3|CAB07243.2|  301|Caenorhabditis elegans Hypothetical
           protein K01G5.2b protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 466 NTILTKQMDDIEARLKGFQKGVDKIIKKNSAKPERKTIMIDPPEPKKQRQDNN 624
           N    + +D+ E   + F K    I K++S KPE      DP E K ++++ N
Sbjct: 56  NLQCVEMLDEFE---REFSKREKPIRKRHSQKPEPSEDQADPEEDKDEKKETN 105


>Z92803-2|CAB07241.1|  175|Caenorhabditis elegans Hypothetical
           protein K01G5.2a protein.
          Length = 175

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 466 NTILTKQMDDIEARLKGFQKGVDKIIKKNSAKPERKTIMIDPPEPKKQRQDNN 624
           N    + +D+ E   + F K    I K++S KPE      DP E K ++++ N
Sbjct: 56  NLQCVEMLDEFE---REFSKREKPIRKRHSQKPEPSEDQADPEEDKDEKKETN 105


>U50067-5|AAY86219.1|  306|Caenorhabditis elegans Hypothetical
           protein C18F3.4 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 481 KQMDDIEARLKGFQKGVDKIIKKNSAKPERKTIMIDPPEPKKQRQDNNDFETDPD 645
           +++ DIE +    +K + + I K    P RK   ++  + K++ Q+  D   DPD
Sbjct: 228 EELRDIEQKCDLSRKQILRFIAKRLTNPNRKP-RVNHHDEKRKEQEERDSLADPD 281


>U40419-8|AAA81428.3|  673|Caenorhabditis elegans Hypothetical
           protein C27F2.1 protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 478 TKQMDDIEARLKGFQKGVDKIIKKNSAKPERKTIMIDP-PEPKKQRQDNNDFETDPDGF 651
           +K+ D  + + K  +K   K  K+   K E+K+  I P PEP+   +  +DFE   D F
Sbjct: 9   SKEKDSKKEKKKDKEKS-SKEKKEKKDKKEKKSKTIKPEPEPEPVNEYEDDFEDYEDDF 66


>AF123574-1|AAD21197.1|  175|Caenorhabditis elegans chromo-domain
           protein protein.
          Length = 175

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 466 NTILTKQMDDIEARLKGFQKGVDKIIKKNSAKPERKTIMIDPPEPKKQRQDNN 624
           N    + +D+ E   + F K    I K++S KPE      DP E K ++++ N
Sbjct: 56  NLQCVEMLDEFE---REFSKREKPIRKRHSQKPEPSEDQADPEEDKDEKKETN 105


>AF123573-1|AAD21196.1|  301|Caenorhabditis elegans chromo-domain
           protein protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 466 NTILTKQMDDIEARLKGFQKGVDKIIKKNSAKPERKTIMIDPPEPKKQRQDNN 624
           N    + +D+ E   + F K    I K++S KPE      DP E K ++++ N
Sbjct: 56  NLQCVEMLDEFE---REFSKREKPIRKRHSQKPEPSEDQADPEEDKDEKKETN 105


>Z49070-4|CAE45098.2|  528|Caenorhabditis elegans Hypothetical
           protein T09F3.5 protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +1

Query: 649 FVQVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQAL 828
           FV+V T G    +      A  G+YWG   + N    +   A+N    + A  +AI  A 
Sbjct: 52  FVRVDTTGYSFTDSTGKRIAKYGIYWGKDDTRNGIRTLPDGASNVAAMLTAILEAINVAR 111

Query: 829 QNGXQNYLL 855
           +      LL
Sbjct: 112 EEDPPPSLL 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,257,037
Number of Sequences: 27780
Number of extensions: 387179
Number of successful extensions: 1410
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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