Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P22
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    26   0.53 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.53 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   1.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   1.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   2.1  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   8.6  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 654 YKAIRVSFKIVVVLSLFFWFGWINHYRFS 568
           +KAI      ++++ LF+ FG I H + S
Sbjct: 47  FKAIGTCGSHIIIVGLFYEFGLITHVKLS 75


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 634 TDPDGFVQVYTDGACSANGRSSAKAG 711
           T P+ FV++Y DG    + R + KAG
Sbjct: 104 TSPNKFVRLYQDGRVLYSSRLTIKAG 129


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 28  IGNSLRF*MYFSELCFLKKETRLCVNRAFTY 120
           +  SL    YF E+C L    R+   RA TY
Sbjct: 510 VATSLSDGSYFGEICLLTNARRVASVRAETY 540


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 28  IGNSLRF*MYFSELCFLKKETRLCVNRAFTY 120
           +  SL    YF E+C L    R+   RA TY
Sbjct: 478 VATSLSDGSYFGEICLLTNARRVASVRAETY 508


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 589 PPEPKKQRQDNNDFETDPDGFVQVYTDGA 675
           PP P   R++  D ET  +  ++V+ DG+
Sbjct: 338 PPPPLVWRRNGADLETLNEPEIRVFNDGS 366


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 37  SLRF*MYFSELCFLKKETR 93
           SLR  +YFSE  +L K T+
Sbjct: 522 SLRMILYFSEFAYLGKPTK 540


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 667 DGACSANGRSSAKAG 711
           D AC+AN  S  KAG
Sbjct: 32  DSACAANCHSLGKAG 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,785
Number of Sequences: 438
Number of extensions: 5104
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)