Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P21
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0051 + 15430980-15431591                                         33   0.30 
12_01_1039 - 10699966-10700313,10700376-10700486,10700709-107008...    29   5.0  
02_03_0347 - 17999780-18000592,18000656-18003019                       29   6.6  
10_08_0892 - 21347588-21348346                                         28   8.7  

>01_04_0051 + 15430980-15431591
          Length = 203

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
 Frame = -1

Query: 201 ACPRRACQLRRRSWGRMCKRHRTPPCLPPH--VALQEAQGGGMAVPSWEMREXQSXXGR 31
           A  RR   LRR   G      RTPP LPPH   A Q     G   PSW  R       R
Sbjct: 110 ALRRRPALLRRIELGSP----RTPPWLPPHWAAAAQRPWPRGSTTPSWRCRRRMEAGAR 164


>12_01_1039 -
           10699966-10700313,10700376-10700486,10700709-10700860,
           10701226-10701284,10702805-10703040
          Length = 301

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 183 CQLRRRSWGRMCKRHRTPPCLPPHVALQEAQG--GGMAVPSW 64
           C    R   ++  R   PPCLPP + L+E  G   GM    W
Sbjct: 177 CHYGWRWLPQVSSRPPVPPCLPPPLPLEEEHGFRMGMVTTRW 218


>02_03_0347 - 17999780-18000592,18000656-18003019
          Length = 1058

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 156 RMCKRHRTPPCLPPHVALQEAQGG 85
           R C+   T PC+P HV +   +GG
Sbjct: 340 RFCQVRNTIPCIPAHVVIYAFRGG 363


>10_08_0892 - 21347588-21348346
          Length = 252

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 132 PPCLPPHVALQEAQGGG 82
           PP  PPH  LQ A GGG
Sbjct: 73  PPKFPPHQQLQAAMGGG 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,838,889
Number of Sequences: 37544
Number of extensions: 164081
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)