Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P20
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    75   1e-14
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    75   1e-14
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    32   0.10 
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.9  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 39/82 (47%), Positives = 46/82 (56%)
 Frame = +2

Query: 179 KHVGLGFKTPXEAXEGTYIDKXCPFTGNVSIRGRILTGVVQKXEDAEKLS*SAAITFTTY 358
           K VGLGFKTP EA  G Y+DK CPF G VSIRGRILTG V   +    +           
Sbjct: 33  KDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREY-LHFI 91

Query: 359 PNTIGSRXRHRNMSVHLSPCFR 424
           P       RH+N++ H+SP FR
Sbjct: 92  PKYNRYEKRHKNLAAHVSPAFR 113



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = +3

Query: 429 VEXGDIVTIGECRPLSKTVRFNVLKV 506
           +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 114 INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 39/82 (47%), Positives = 46/82 (56%)
 Frame = +2

Query: 179 KHVGLGFKTPXEAXEGTYIDKXCPFTGNVSIRGRILTGVVQKXEDAEKLS*SAAITFTTY 358
           K VGLGFKTP EA  G Y+DK CPF G VSIRGRILTG V   +    +           
Sbjct: 33  KDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREY-LHFI 91

Query: 359 PNTIGSRXRHRNMSVHLSPCFR 424
           P       RH+N++ H+SP FR
Sbjct: 92  PKYNRYEKRHKNLAAHVSPAFR 113



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = +3

Query: 429 VEXGDIVTIGECRPLSKTVRFNVLKV 506
           +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 114 INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 438 GDIVTIGECRPLSKTVRFNVLKV 506
           GD VTI  CRP S T RF ++K+
Sbjct: 52  GDAVTIQPCRPRSATKRFEIIKI 74


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 186 TCFMVTQWPVRCNATL 139
           TCF  TQ+PV CN+ L
Sbjct: 208 TCFNGTQYPVNCNSAL 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,437
Number of Sequences: 5004
Number of extensions: 33755
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)