Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P20
         (947 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...    75   7e-14
AC024757-8|AAF59454.2|  215|Caenorhabditis elegans Hypothetical ...    29   6.4  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score = 74.9 bits (176), Expect = 7e-14
 Identities = 40/84 (47%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = +2

Query: 176 IKHVGLGFKTPXEAXEGTYIDKXCPFTGNVSIRGRILTGVVQKXEDAEKLS*SAAITFTT 355
           I+ VGLGFK P +A EGTYIDK CP+ GNV IRG ILTGVV K +    +       +  
Sbjct: 34  IREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIRGMILTGVVLKNKMTRTI--VVRRDYLH 91

Query: 356 YPNTIGS-RXRHRNMSVHLSPCFR 424
           Y         RH+N+  H SP FR
Sbjct: 92  YIKKYRRYEKRHKNVPAHCSPAFR 115



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = +3

Query: 399 PCICRLASGDVEXGDIVTIGECRPLSKTVRFNVLKV 506
           P  C  A  D+  GD+VTIGECRPLSKTVRFNVLKV
Sbjct: 107 PAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVLKV 142


>AC024757-8|AAF59454.2|  215|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.2 protein.
          Length = 215

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 421 EARRQMHGHIPVPXSRTYCIWVGSEGNR 338
           + R + HGH+ VP   T C+ +  +GN+
Sbjct: 103 QPRARTHGHLFVPDPPTPCVKISEDGNQ 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,263,853
Number of Sequences: 27780
Number of extensions: 199784
Number of successful extensions: 353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)