Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P19
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...   193   3e-50
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    32   0.096
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    29   0.89 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   8.3  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   8.3  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    26   8.3  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score =  193 bits (470), Expect = 3e-50
 Identities = 93/232 (40%), Positives = 146/232 (62%), Gaps = 1/232 (0%)
 Frame = +3

Query: 72  VITFDMKHSAEIQACDLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASYVVEPESTQILQ 251
           ++ F + H+AE  A DLL E+  ++ +   ++  N  RVCLY+  C + +  PE   +L+
Sbjct: 193 IVPFFLTHNAEADAIDLLQELGAIEKVVPFVELDNASRVCLYITSCVNLLPFPEDVAMLR 252

Query: 252 GVLDTYLRFGEYPRAMLVAMQLHEKAKCEEVFNACNDPLIKKQLCYLLARQYIPLEVDDE 431
                Y +F +  +A+ VA++L + +  +E   A  DPL+KKQ+ Y+LARQ IP+++ DE
Sbjct: 253 TAHAIYRKFDQLTQALNVAIRLDDMSLIKEDCEAATDPLLKKQMSYMLARQQIPMDMGDE 312

Query: 432 DLRTILLNAHINDHFLSLARELDIMEPKTPEEVYKTWLESAGSALRPSLLTEHPVDSARQ 611
           +L   L N H++DHF  L +EL++M+PK PE+++KT LE A + L  S      V SA+Q
Sbjct: 313 ELNDALNNTHLSDHFHYLGKELNLMDPKVPEDIFKTHLEVARTGLGAS-----GVYSAKQ 367

Query: 612 NLSATFVNAFVNAGFGRDKLVTTDD-GNKWMYXXKDHGMLSAAASLGMIHXW 764
           NL+ TFVNA VNAG+  D+L+  DD    W+Y  K+ G++SA AS+G++  W
Sbjct: 368 NLANTFVNALVNAGYSNDRLILVDDEKTSWIYKNKESGLISATASIGLLQLW 419


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 32.3 bits (70), Expect = 0.096
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 618 SATFVNAFVNAGFGRDKLVTTDDGNKWMYXXKDHGMLSAAASLGMIH 758
           + TF NAF+N G   D      D   W+    +    +A A+LG+IH
Sbjct: 350 AVTFANAFMNFGTSSDSFFR--DNLSWLSKANNWSKFTATAALGVIH 394


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = +3

Query: 324 KAKCEEVFNACNDPLIKKQLCYLLARQYIPLEVDDEDLRTILLNAHINDHFLSLARELDI 503
           KA  + +  AC   L + ++C+LL R  +  + +  D +T+L+  ++      +  + DI
Sbjct: 296 KADIDYLNEACGLSLPEDEICHLLTRMMLTAKPNPNDSKTLLV--YVPPLRADILHQCDI 353

Query: 504 ME 509
           ME
Sbjct: 354 ME 355


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 703 YIHLFPSSVVTS-LSRPNPAFTKAFTNVADRFCLA 602
           YIHL  +  + + LSR   AFT  FT + D   LA
Sbjct: 865 YIHLVSNYYLNARLSRQCRAFTNGFTQIIDPHWLA 899


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 199 LLDVQVMLLSLSQHKYYKVS*IHTFVLESTQEQCL*LCNFMRKLN 333
           LL +   L+ L ++ + + S I+  ++  T+E C  + N   KLN
Sbjct: 196 LLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLN 240


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 441 TILLNAHINDHFLSLARELDIMEPKTPEEV 530
           ++ L    NDH++S+ +    M   TPEEV
Sbjct: 119 SLFLATKCNDHYISIEQFCKNMPKTTPEEV 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,385
Number of Sequences: 5004
Number of extensions: 62139
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)