Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_P19
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 210 9e-55
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 206 2e-53
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 190 1e-48
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 29 6.6
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 210 bits (514), Expect = 9e-55
Identities = 106/251 (42%), Positives = 163/251 (64%), Gaps = 17/251 (6%)
Frame = +3
Query: 63 VRXVITFDMKHSAEIQACDLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASYVVEPESTQ 242
V +++F MKH+AE +A DLLME+++LDLL +H+D +NY R CLYL + Y+ P+
Sbjct: 191 VEQIVSFHMKHNAEPEAVDLLMEVEKLDLLVKHVDSTNYKRTCLYLTSSSKYLPAPDDMS 250
Query: 243 ILQGVLDTYLRFGEYPRAMLVAMQLHEKA-KCEEVFNACNDPLIKKQLCYLLARQYIPLE 419
L+ + Y++FG++ A+ +A+ L++K+ + + +F A +D +KKQ +++AR + +E
Sbjct: 251 ALKIAFEIYMKFGDFANALRIALLLYDKSLELKPIFTATDDFQLKKQFAFIIARHGLSIE 310
Query: 420 VDD---------EDLRTILLNAHINDHFLSLARELDIMEPKTPEEVYKTWLESAGSALRP 572
+DD E L+ I+ N +++ +L+LAR++++MEPK+PE++YK L A
Sbjct: 311 IDDDIAADENEKEALQDIISNIKLSEGYLTLARDIEVMEPKSPEDIYKVHLIDGRGATSS 370
Query: 573 SLLTEHPVDSARQNLSATFVNAFVNAGFGRDKLVTT-------DDGNKWMYXXKDHGMLS 731
SL DSARQNL+ATFVNAFVNAGFG+DKL+TT W++ K+HG S
Sbjct: 371 SL------DSARQNLAATFVNAFVNAGFGQDKLMTTPSDSSSSGSSGNWLFKNKEHGKAS 424
Query: 732 AAASLGMIHXW 764
AAASLGMI W
Sbjct: 425 AAASLGMILLW 435
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 206 bits (503), Expect = 2e-53
Identities = 104/251 (41%), Positives = 162/251 (64%), Gaps = 17/251 (6%)
Frame = +3
Query: 63 VRXVITFDMKHSAEIQACDLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASYVVEPESTQ 242
V +++F MKH+AE +A DLLME+++LDLL +H+D +NY R CLYL + Y+ P+
Sbjct: 216 VEQIVSFHMKHNAEPEAVDLLMEVEKLDLLVKHVDSTNYKRTCLYLTSSSKYLPAPDDMS 275
Query: 243 ILQGVLDTYLRFGEYPRAMLVAMQLHEKA-KCEEVFNACNDPLIKKQLCYLLARQYIPLE 419
L+ + Y++FG++ A+ +A+ L +K+ + +++F A +D +KKQ +++AR + +
Sbjct: 276 ALKIAFEIYMKFGDFANALRIALLLDDKSLELKQIFTATDDFHLKKQFAFIIARHGLSTD 335
Query: 420 VDD---------EDLRTILLNAHINDHFLSLARELDIMEPKTPEEVYKTWLESAGSALRP 572
+DD E L+ I+ N +++ +L+LAR++++MEPK+PE++YK L A
Sbjct: 336 IDDDIAADENEKEALQDIISNIKLSEGYLTLARDIEVMEPKSPEDIYKVHLIDGRGATSS 395
Query: 573 SLLTEHPVDSARQNLSATFVNAFVNAGFGRDKLVT-------TDDGNKWMYXXKDHGMLS 731
SL DSARQNL+ATFVNAFVNAGFG+DKL+T + W++ K+HG S
Sbjct: 396 SL------DSARQNLAATFVNAFVNAGFGQDKLMTAPSDSSGSGSSGNWLFKNKEHGKAS 449
Query: 732 AAASLGMIHXW 764
AAASLGMI W
Sbjct: 450 AAASLGMILLW 460
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 190 bits (463), Expect = 1e-48
Identities = 101/252 (40%), Positives = 154/252 (61%), Gaps = 18/252 (7%)
Frame = +3
Query: 63 VRXVITFDMKHSAEIQACDLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASYVVEPESTQ 242
V+ +++F MKH+AE +A DLLME++ LDLL +H+D +NY R CLYL + Y+ P+
Sbjct: 187 VQQIVSFHMKHNAEPEAVDLLMEVEDLDLLVEHVDSTNYKRTCLYLTSSSKYLPAPDDML 246
Query: 243 ILQGVLDTYLRFGEYPRAMLVAMQLHEKAK--CEEVFNACNDPLIKKQLCYLLARQYIPL 416
L Y++F + A+ +A+ L K+ ++V+ A D +KKQ +++AR + +
Sbjct: 247 ALDIAYTIYMKFEDLTSALRIALLLDNKSMQYVKQVYTATEDLQLKKQFSFIIARHGLAM 306
Query: 417 EVDD---------EDLRTILLNAHINDHFLSLARELDIMEPKTPEEVYKTWLESAGSALR 569
E+DD E L+ I+ N+ +++ +L+LAR++++ME K+PE++YK L A
Sbjct: 307 EIDDEIAADGNDKEGLQEIVNNSKLSEGYLTLARDIEVMEAKSPEDIYKVHLIDGRGA-- 364
Query: 570 PSLLTEHPVDSARQNLSATFVNAFVNAGFGRDKLVTTDD-------GNKWMYXXKDHGML 728
+DSARQNL+ATFVNAFVNAGFG+DKL+T W++ K+HG
Sbjct: 365 -----SSSLDSARQNLAATFVNAFVNAGFGQDKLMTAPSDSSSSGASGNWLFKNKEHGKA 419
Query: 729 SAAASLGMIHXW 764
SAAASLGMI W
Sbjct: 420 SAAASLGMILLW 431
>04_04_1690 -
35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 28.7 bits (61), Expect = 6.6
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = +3
Query: 363 PLIKKQLCYLLA-RQYIPLEVDDEDLRTILLNAHINDHFLSLARELDIMEP--KTPEEVY 533
P + + +C L A R++ L VD ++ IL I + +L+ L T E +
Sbjct: 605 PDVLRLICALAAHRKFAALFVDRGGIQKILSVPRIAQTYTALSACLFTFGSLQSTMERIC 664
Query: 534 KTWLESAGSALRPSL-LTEHPVDSARQNLSATFVNAFV 644
++ + + +L L E P DSAR+N + F AFV
Sbjct: 665 ALSSDTLNNVVELALQLLECPQDSARKNAAIFFAAAFV 702
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,118,922
Number of Sequences: 37544
Number of extensions: 396902
Number of successful extensions: 792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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