Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P19
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...   205   3e-53
Z82082-11|CAH10808.1|  721|Caenorhabditis elegans Hypothetical p...    36   0.052
Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical pr...    36   0.052
AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical...    36   0.052
Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p...    30   1.9  
AC006790-12|AAF60728.2|  332|Caenorhabditis elegans Cyclin h pro...    30   1.9  
AF024493-6|AAB70325.2|  184|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score =  205 bits (501), Expect = 3e-53
 Identities = 101/236 (42%), Positives = 156/236 (66%), Gaps = 5/236 (2%)
 Frame = +3

Query: 72  VITFDMKHSAEIQACDLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASYVVEPESTQILQ 251
           +++  MKH+AE++ACDLL+EI+R+DLL  ++ + ++ RVCLYL+ CA    +P++  +++
Sbjct: 178 IVSHHMKHNAEVEACDLLIEIERIDLLISYVQEVDHQRVCLYLLSCAPLTPDPDNIILIR 237

Query: 252 GVLDTYLRFGEYPRAMLVAMQLHEKAKCEEVFNACNDPLIKKQLCYLLARQYIPLE---- 419
             L  YL+F  Y  A+  A+ +++  +  ++F   +DPL++KQ+  LL R  I L+    
Sbjct: 238 TALQLYLKFNRYLEAVRCAIMVNDIPQVHQIFAKASDPLLRKQMAILLGRHQIFLDYEGS 297

Query: 420 VDDEDLRTILLNAHINDHFLSLARELDIMEPKTPEEVYKTWLESAGSALRPSLLTEHPVD 599
            D + L  +  NAH+ ++F SLARELDIMEPKTPE +YK+ LE +    RP   +  P D
Sbjct: 298 ADSDALAELNSNAHLYEYFHSLARELDIMEPKTPEGIYKSHLEHS----RPFGNSAQP-D 352

Query: 600 SARQNLSATFVNAFVNAGFGRDKLVT-TDDGNKWMYXXKDHGMLSAAASLGMIHXW 764
           S R NL+A  VN FVN GFG DK++  T++ ++W Y  K++GML+AAAS G+I  W
Sbjct: 353 STRMNLAAALVNGFVNCGFGVDKMMAETEEASRWFYKNKEYGMLTAAASQGLIWRW 408


>Z82082-11|CAH10808.1|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +3

Query: 249 QGVLDTYLRFGEYPRAMLVAMQL-HEKAKCEEVFNACNDPLIKKQLCYLLARQYIPLEVD 425
           Q +L T+     Y    ++A++L H  +  E VF  C D L+KKQ  YLLA + I ++VD
Sbjct: 589 QVLLKTWTSDRAYLVLSILALRLNHSDSSTECVFKKCADELLKKQFPYLLATK-ISVDVD 647


>Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12b protein.
          Length = 586

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +3

Query: 249 QGVLDTYLRFGEYPRAMLVAMQL-HEKAKCEEVFNACNDPLIKKQLCYLLARQYIPLEVD 425
           Q +L T+     Y    ++A++L H  +  E VF  C D L+KKQ  YLLA + I ++VD
Sbjct: 454 QVLLKTWTSDRAYLVLSILALRLNHSDSSTECVFKKCADELLKKQFPYLLATK-ISVDVD 512


>AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +3

Query: 249 QGVLDTYLRFGEYPRAMLVAMQL-HEKAKCEEVFNACNDPLIKKQLCYLLARQYIPLEVD 425
           Q +L T+     Y    ++A++L H  +  E VF  C D L+KKQ  YLLA + I ++VD
Sbjct: 589 QVLLKTWTSDRAYLVLSILALRLNHSDSSTECVFKKCADELLKKQFPYLLATK-ISVDVD 647


>Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical
           protein F47G4.2 protein.
          Length = 710

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 285 YPRAMLVAMQL-HEKAKCEEVFNACNDPLIKKQLCYLLARQYIPLEVD 425
           Y    + A++L H+    E VF  C D L++K   YLLA + I ++VD
Sbjct: 590 YLMLSIFALRLNHQDKNFECVFRKCADELLRKHFPYLLATE-ITVDVD 636


>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
            F21G4.2 protein.
          Length = 1573

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 783  RPPVYXPXSESYQGTRPLRAYH 718
            R P+Y   SES QG+  +RAYH
Sbjct: 1188 RSPIYSHLSESIQGSATIRAYH 1209


>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
            protein F21G4.2 protein.
          Length = 1573

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 783  RPPVYXPXSESYQGTRPLRAYH 718
            R P+Y   SES QG+  +RAYH
Sbjct: 1188 RSPIYSHLSESIQGSATIRAYH 1209


>AC006790-12|AAF60728.2|  332|Caenorhabditis elegans Cyclin h
           protein 1 protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 468 DHFLSLARELDIMEPKTPEEVYKTWLESAGSALRPSLLTEHPVDS 602
           +H   LAR +  + P   E   + WL   G  L P  L E PVDS
Sbjct: 284 NHKSQLAR-IQALIPALDERRKEQWLAGGGVGLMPGELAEQPVDS 327


>AF024493-6|AAB70325.2|  184|Caenorhabditis elegans Hypothetical
           protein F23F1.7 protein.
          Length = 184

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 366 LIKKQLCYLLARQYIPLEVDDEDLRTILLNAHINDHFLSLARELDIMEPKTP 521
           ++ K LC +L    IP+    +DL+TI  +  +  +  S   E D+M P  P
Sbjct: 1   MLVKFLCLVLPVYSIPIAPSFKDLQTIKPDYKLIKYTFSRDNETDVMSPDPP 52


>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
           protein T21B10.3 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
 Frame = +3

Query: 243 ILQGVLDTYLRFGEYPRAMLVAMQLHEKAKCEEVFNACNDPLIKKQLCYLLARQYIPLEV 422
           +L G++D      E   A L+  Q  ++   + V     DP +K Q+C LL    I L  
Sbjct: 19  VLNGLVDE-----EATAAALIRYQFQQRTIKDVVRRGSEDPELKAQICDLLNHLVIYLNE 73

Query: 423 DDEDLRTILLNAHIND-HFLSLARELDIMEPKTPEEVYKTWLESAGSALRPSLLTEHPVD 599
           +  +  +      ++D HF+ L + + +M      EVY   +      L P  LT+H VD
Sbjct: 74  EIVETSSKACPDGMDDRHFVQLEKRMHLM-----FEVYLA-MNVVPDYLIPD-LTKH-VD 125

Query: 600 SARQNLSATF 629
           ++R+ +  ++
Sbjct: 126 ASREAVKYSY 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,474,797
Number of Sequences: 27780
Number of extensions: 358352
Number of successful extensions: 842
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)