Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P18
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    52   1e-07
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    45   1e-05
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    29   0.90 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   6.3  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   8.4  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 24/47 (51%), Positives = 28/47 (59%)
 Frame = +1

Query: 748 GEHGKRVRKIRNSVHFRRPXTFEPPXHPKYQXKSLPKRNRMDAYNII 888
           G H K  RK+R S  FRRP T E    PKY  KS+P  +R+D Y II
Sbjct: 16  GIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 21/47 (44%), Positives = 26/47 (55%)
 Frame = +1

Query: 748 GEHGKRVRKIRNSVHFRRPXTFEPPXHPKYQXKSLPKRNRMDAYNII 888
           G H K  +K+R S  FRRP T +    PKY  KS+    R+D Y II
Sbjct: 16  GIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 752 SPFTTFPLSLKCFSNRFHYF 693
           SP  TFPLS   + NRFH F
Sbjct: 269 SPTATFPLSKNTWKNRFHTF 288


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 608 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 697
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 141 LLPVXFPRVWTRRTRISRVA 82
           ++P+ FPR W+   + S+VA
Sbjct: 170 IIPLFFPRAWSPTVKFSKVA 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,738
Number of Sequences: 5004
Number of extensions: 23226
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)