Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P18
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    47   2e-05
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     46   3e-05
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           29   6.7  
03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849...    28   8.8  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 22/48 (45%), Positives = 27/48 (56%)
 Frame = +1

Query: 748 GEHGKRVRKIRNSVHFRRPXTFEPPXHPKYQXKSLPKRNRMDAYNIIK 891
           G   K  +KIR SV F RP T +    PKY   S P RN++D Y I+K
Sbjct: 37  GTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILK 84


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 21/48 (43%), Positives = 28/48 (58%)
 Frame = +1

Query: 748 GEHGKRVRKIRNSVHFRRPXTFEPPXHPKYQXKSLPKRNRMDAYNIIK 891
           G   ++ +KIR SV F RP T +    PKY   S P RN++D Y I+K
Sbjct: 27  GSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILK 74


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 212 VSQNTGTCPESSCACPETSC 271
           ++++  TCP + C CPE  C
Sbjct: 116 ITEHEKTCPHAPCFCPEPGC 135


>03_05_1138 +
           30684014-30684386,30684480-30684865,30684870-30684962,
           30684963-30685108,30685211-30685454,30685562-30685666,
           30685774-30685956,30686052-30686738
          Length = 738

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 802 VCGNAQSCEFSVLSSHVHLLQPFL*ALSALVTGF 701
           VCG AQ C   ++S    ++QPFL A+ ALV  +
Sbjct: 646 VCGAAQ-CATVLISGRPVVVQPFLGAMDALVAAW 678


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,682,040
Number of Sequences: 37544
Number of extensions: 156030
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)