Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P18
         (900 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p pro...    71   2e-12
AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA ...    71   2e-12
DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosom...    70   4e-12
AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal pr...    69   7e-12

>BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p
           protein.
          Length = 269

 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 32/48 (66%), Positives = 35/48 (72%)
 Frame = +1

Query: 748 GEHGKRVRKIRNSVHFRRPXTFEPPXHPKYQXKSLPKRNRMDAYNIIK 891
           G  G R RKIR +VHFRRP T + P  PKY  KS+P RNRMDAYNIIK
Sbjct: 144 GAFGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIK 191


>AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA
           protein.
          Length = 277

 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 32/48 (66%), Positives = 35/48 (72%)
 Frame = +1

Query: 748 GEHGKRVRKIRNSVHFRRPXTFEPPXHPKYQXKSLPKRNRMDAYNIIK 891
           G  G R RKIR +VHFRRP T + P  PKY  KS+P RNRMDAYNIIK
Sbjct: 152 GAFGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIK 199


>DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosomal
           protein naturalvariant protein.
          Length = 277

 Score = 70.1 bits (164), Expect = 4e-12
 Identities = 32/48 (66%), Positives = 35/48 (72%)
 Frame = +1

Query: 748 GEHGKRVRKIRNSVHFRRPXTFEPPXHPKYQXKSLPKRNRMDAYNIIK 891
           G  G R RKIR +VHFRRP T + P  PKY  KS+P RNRMDAYNIIK
Sbjct: 152 GAFGTRARKIRANVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIK 199


>AF080130-1|AAD19340.1|  269|Drosophila melanogaster ribosomal
           protein L23a protein.
          Length = 269

 Score = 69.3 bits (162), Expect = 7e-12
 Identities = 31/45 (68%), Positives = 34/45 (75%)
 Frame = +1

Query: 757 GKRVRKIRNSVHFRRPXTFEPPXHPKYQXKSLPKRNRMDAYNIIK 891
           G R RKIR +VHFRRP T + P  PKY  KS+P RNRMDAYNIIK
Sbjct: 147 GTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIK 191


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,898,377
Number of Sequences: 53049
Number of extensions: 258667
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4382549442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)