Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P18
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    46   3e-05
U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    45   9e-05
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      28   7.9  
AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog ...    28   7.9  

>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +1

Query: 766 VRK-IRNSVHFRRPXTFEPPXHPKYQXKSLPKRNRMDAYNIIK 891
           VRK +R SVHFRRP T      P+Y  KS P R+++D++ +IK
Sbjct: 26  VRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIK 68


>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
 Frame = +1

Query: 757 GKRV---RKIRNSVHFRRPXTFEPPXHPKYQXKSLPKRNRMDAYNIIK 891
           GKR    R++R SVHFRRP T +     ++  KS PK ++MD + II+
Sbjct: 22  GKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQ 69


>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
           protein F09E8.3 protein.
          Length = 1369

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 817 VQTXWVCGNAQSCEFSVLSSHVHLLQPFL*ALSALVTGFTTF 692
           V T W+   A  C    LSSH H L  ++  L   +  F TF
Sbjct: 736 VMTYWMNRGADRCPHIFLSSHFHALPNYI-PLETNIATFLTF 776


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 817 VQTXWVCGNAQSCEFSVLSSHVHLLQPFL*ALSALVTGFTTF 692
           V T W+   A  C    LSSH H L  ++  L   +  F TF
Sbjct: 736 VMTYWMNRGADRCPHIFLSSHFHALPNYI-PLETNIATFLTF 776


>AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog
           protein.
          Length = 933

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 817 VQTXWVCGNAQSCEFSVLSSHVHLLQPFL*ALSALVTGFTTF 692
           V T W+   A  C    LSSH H L  ++  L   +  F TF
Sbjct: 736 VMTYWMNRGADRCPHIFLSSHFHALPNYI-PLETNIATFLTF 776


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,780,054
Number of Sequences: 27780
Number of extensions: 139459
Number of successful extensions: 431
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)