Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P16
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0875 - 23920023-23920967,23921045-23921599,23921678-239220...    33   0.31 
11_08_0084 + 28260647-28262575                                         29   6.6  
04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911           29   6.6  
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607...    28   8.8  
06_03_1304 - 29187930-29188273,29188926-29189039,29189453-291897...    28   8.8  

>12_02_0875 -
           23920023-23920967,23921045-23921599,23921678-23922083,
           23922175-23922452
          Length = 727

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 24/66 (36%), Positives = 30/66 (45%)
 Frame = +3

Query: 600 FPTVESANNLSLVEKCAKVDEMTSWYREIPRRVFHTDTR*HGGITDQVHAQRLSLPHRSA 779
           F T   A   S + K A   EM +  RE  RR  +   R HGG+      +RLS  H+S 
Sbjct: 415 FRTEPYACEPSSLPKYAPNKEMDAKLREDSRRRVNVGGRNHGGVGGGEATKRLSRGHKSM 474

Query: 780 QDRLIA 797
           QD   A
Sbjct: 475 QDTTAA 480


>11_08_0084 + 28260647-28262575
          Length = 642

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 678 DTRRSSHQLLRIFQQGSSYW 619
           D RRS+H+LLR  +Q SS W
Sbjct: 277 DDRRSAHELLRQIKQHSSAW 296


>04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911
          Length = 691

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 453 HH*CGSHIRCLHKDARPCSTELIQPFS 373
           HH C  HI  LH+D +PC+  L + F+
Sbjct: 494 HHECDPHI--LHRDIKPCNVLLDENFN 518


>07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,
            6071030-6071211,6071331-6071422,6071505-6071835,
            6071960-6072170,6072551-6072665,6073677-6073838,
            6073938-6074610,6074766-6074972,6075134-6076254
          Length = 1274

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -1

Query: 481  SMS*LVLFWASLM--WFAYSLPTQGRTXLQHRADTAFQLSTSCHSTFLKTSSS 329
            SM  +   W   +  W  + + +  RT   H  D  FQL  SC +  L  SS+
Sbjct: 951  SMPIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVFQLLRSCFTATLGMSST 1003


>06_03_1304 -
           29187930-29188273,29188926-29189039,29189453-29189722,
           29190098-29190234,29190483-29191159
          Length = 513

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 344 QESTVTRSAQLKGCISSVLQGRASLCRQRICEPHQ*CPK 460
           Q+ST +   Q++GC   +   R    + ++CE H   PK
Sbjct: 172 QQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPK 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,507,017
Number of Sequences: 37544
Number of extensions: 434701
Number of successful extensions: 1111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)