Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P16
         (898 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF076929-1|AAD30362.1|  919|Homo sapiens synphilin 1 protein.          31   4.3  
AB110789-1|BAD19018.1|  859|Homo sapiens synphilin-1b protein pr...    31   4.3  
AB110788-1|BAD19017.1|  919|Homo sapiens synphilin-1a protein pr...    31   4.3  
AK096003-1|BAC04669.1|  620|Homo sapiens protein ( Homo sapiens ...    30   9.9  
AJ316534-1|CAC48387.1| 1231|Homo sapiens serine/threonine protei...    30   9.9  
AF390018-1|AAK91995.1| 1243|Homo sapiens putative protein kinase...    30   9.9  

>AF076929-1|AAD30362.1|  919|Homo sapiens synphilin 1 protein.
          Length = 919

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 412 RTXLQHRADTAFQLSTSCHSTFLKTSSSAPFGLAASISVFRTFKSTSPLRQFPK 251
           R   Q+   +A   S +C  + L T++  P G+A   S FR  K  SPL+  P+
Sbjct: 34  RCDTQNEDRSASSSSWNCGISTLITNTQKPTGIADVYSKFRPVKRVSPLKHQPE 87


>AB110789-1|BAD19018.1|  859|Homo sapiens synphilin-1b protein
           protein.
          Length = 859

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 412 RTXLQHRADTAFQLSTSCHSTFLKTSSSAPFGLAASISVFRTFKSTSPLRQFPK 251
           R   Q+   +A   S +C  + L T++  P G+A   S FR  K  SPL+  P+
Sbjct: 34  RCDTQNEDRSASSSSWNCGISTLITNTQKPTGIADVYSKFRPVKRVSPLKHQPE 87


>AB110788-1|BAD19017.1|  919|Homo sapiens synphilin-1a protein
           protein.
          Length = 919

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 412 RTXLQHRADTAFQLSTSCHSTFLKTSSSAPFGLAASISVFRTFKSTSPLRQFPK 251
           R   Q+   +A   S +C  + L T++  P G+A   S FR  K  SPL+  P+
Sbjct: 34  RCDTQNEDRSASSSSWNCGISTLITNTQKPTGIADVYSKFRPVKRVSPLKHQPE 87


>AK096003-1|BAC04669.1|  620|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38684 fis, clone KIDNE2000801. ).
          Length = 620

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 21/50 (42%), Positives = 24/50 (48%)
 Frame = -1

Query: 418 QGRTXLQHRADTAFQLSTSCHSTFLKTSSSAPFGLAASISVFRTFKSTSP 269
           Q  T L+HR+ TAF  S+S   T L  S   PF     IS    F  TSP
Sbjct: 242 QSSTSLEHRSWTAFSTSSSSPGTPL--SPGNPFSPGTPISPGPIFPITSP 289


>AJ316534-1|CAC48387.1| 1231|Homo sapiens serine/threonine protein
           kinase protein.
          Length = 1231

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 21/50 (42%), Positives = 24/50 (48%)
 Frame = -1

Query: 418 QGRTXLQHRADTAFQLSTSCHSTFLKTSSSAPFGLAASISVFRTFKSTSP 269
           Q  T L+HR+ TAF  S+S   T L  S   PF     IS    F  TSP
Sbjct: 775 QSSTSLEHRSWTAFSTSSSSPGTPL--SPGNPFSPGTPISPGPIFPITSP 822


>AF390018-1|AAK91995.1| 1243|Homo sapiens putative protein kinase
           WNK4 protein.
          Length = 1243

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 21/50 (42%), Positives = 24/50 (48%)
 Frame = -1

Query: 418 QGRTXLQHRADTAFQLSTSCHSTFLKTSSSAPFGLAASISVFRTFKSTSP 269
           Q  T L+HR+ TAF  S+S   T L  S   PF     IS    F  TSP
Sbjct: 787 QSSTSLEHRSWTAFSTSSSSPGTPL--SPGNPFSPGTPISPGPIFPITSP 834


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,190,139
Number of Sequences: 237096
Number of extensions: 2301986
Number of successful extensions: 5107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5107
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)