Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P15
         (895 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   7.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   7.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 273  QTKPTASTTRLYTTSASAL 329
            QTK T STT   TT+ S L
Sbjct: 1184 QTKTTTSTTTRPTTTVSQL 1202



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 681  TSKTRTPHTSWNGSPTT*RPPCATFPLV 764
            ++ TR   T+W    TT  PP    P V
Sbjct: 1069 STTTRPTTTNWPTQGTTIPPPAVVMPEV 1096


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 276 TKPTASTTRLYTTSASALSNCP 341
           +K + STT   TT++SAL++ P
Sbjct: 4   SKFSPSTTTTTTTTSSALNSTP 25


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 276 TKPTASTTRLYTTSASALSNCP 341
           +K + STT   TT++SAL++ P
Sbjct: 4   SKFSPSTTTTTTTTSSALNSTP 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,365
Number of Sequences: 336
Number of extensions: 3641
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)