Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_P15
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 326 3e-90
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 163 4e-41
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 160 2e-40
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 114 2e-26
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.67
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 28 2.1
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 27 2.7
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 4.8
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 27 4.8
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 26 6.3
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 8.3
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 326 bits (800), Expect = 3e-90
Identities = 158/261 (60%), Positives = 192/261 (73%)
Frame = +2
Query: 68 LQGFQLXHXXXXXXXXXXXXXXISKTPXXRXPTASXXTXSVSPLAQSXRHCRRNHTMRLS 247
LQGFQL H +SK P T SV+P +S + LS
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLLSKI-REEYPDRMMATFSVAPAPKSSDTVVEPYNATLS 188
Query: 248 QXHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLN 427
HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVS M+GVTT RFPG+LN
Sbjct: 189 M-HQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELN 247
Query: 428 ADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRH 607
+DLRKLAVNMVPFPRLHFFM GFAPL + GS ++A++VPELTQQMFDA NMM A DPRH
Sbjct: 248 SDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRH 307
Query: 608 GRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLXMAATF 787
GRYLTVAA+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AVC +PP+ L M+ATF
Sbjct: 308 GRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATF 367
Query: 788 IGNSTAIXELFKRISEQFTAM 850
IGNST+I E+F+R+ +QF+AM
Sbjct: 368 IGNSTSIQEIFRRLGDQFSAM 388
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 853 RRKXFLHW*XGXGM 894
RRK FLHW G GM
Sbjct: 390 RRKAFLHWYTGEGM 403
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 163 bits (395), Expect = 4e-41
Identities = 74/211 (35%), Positives = 120/211 (56%), Gaps = 8/211 (3%)
Frame = +2
Query: 254 HQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNAD 433
H ++N+D T+ +DNEA YDIC R L + PTY +LN L++ +S +T LRF G LN D
Sbjct: 196 HATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVD 255
Query: 434 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGR 613
L + N+VP+PR+HF + ++P+ S + + +V E+T Q F+ N M CDPR GR
Sbjct: 256 LNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGR 315
Query: 614 YLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GL 769
Y+ ++RG + ++V + +I+++ + FV+W P K +C PP+ +
Sbjct: 316 YMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKV 375
Query: 770 XMAATFIGNSTAIXELFKRISEQFTAMSGAR 862
A + N+T+I E + R+ +F M R
Sbjct: 376 NRAVCMLSNTTSIAEAWSRLDHKFDLMYSKR 406
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 160 bits (389), Expect = 2e-40
Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 8/211 (3%)
Frame = +2
Query: 254 HQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNAD 433
H ++ D T+ +DNE+ YDIC R L + P+Y +LN L++ +S +T LRF G LN D
Sbjct: 192 HATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVD 251
Query: 434 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGR 613
L + N+VP+PR+HF + +AP+ S + + +V E+T Q F+ N M CDPR GR
Sbjct: 252 LAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGR 311
Query: 614 YLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGL-------- 769
Y+ ++RG + ++V + I+ K + FV+W P K +CD PP+ +
Sbjct: 312 YMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKV 371
Query: 770 XMAATFIGNSTAIXELFKRISEQFTAMSGAR 862
A + N+T+I E + R+ +F M R
Sbjct: 372 DRAVCMLSNTTSIAEAWSRLDHKFDLMYSKR 402
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 114 bits (274), Expect = 2e-26
Identities = 72/265 (27%), Positives = 122/265 (46%), Gaps = 7/265 (2%)
Frame = +2
Query: 68 LQGFQLXHXXXXXXXXXXXXXXISKTPXXRXPTASXXTXSVSPLAQSXRHCRRNHTMRLS 247
L+GF L H + + R P T SV P +QS L
Sbjct: 132 LEGFSLLHSIAGGTGSGLGSFLLERL-NDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLL 190
Query: 248 QXHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLN 427
+L N D +DN AL I L PT+ N LVS MS TT LR+PG +N
Sbjct: 191 ALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMN 250
Query: 428 ADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRAL---TVPELTQQMFDAKNMMAACD 598
DL + +++P PR HF + + P T++ + +A+ TV ++ +++ KN M + +
Sbjct: 251 NDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVN 310
Query: 599 P-RHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP---RG 766
P + ++++ I +G +V + +L I+ + + F+ W P +++ A+ P
Sbjct: 311 PSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTN 370
Query: 767 LXMAATFIGNSTAIXELFKRISEQF 841
++ + N T+I LFKR +Q+
Sbjct: 371 HRVSGLMLANHTSIASLFKRTLDQY 395
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 29.5 bits (63), Expect = 0.67
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 270 TQTKPTASTTRLYTTSASALSNCPHPPTVTLTT 368
T T +T + TTS S ++CP P T+ + T
Sbjct: 166 TSTSCNPATVLIVTTSGSTSTSCPPPTTILIVT 198
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +3
Query: 186 QLVPSPKVSDTVVETI--QCDSLXFTS*LKTQTKPTASTTRLYTTS-ASALSNCPHPPTV 356
Q +PSP +D+ + Q L +S +T++ T ++T L T A+ LS+ P+PP+V
Sbjct: 511 QGLPSPATTDSNTHMLPSQGSLLPPSSISETKSFSTKASTPLSTDDIATPLSSAPNPPSV 570
Query: 357 TLT 365
T
Sbjct: 571 MPT 573
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +3
Query: 168 HHXTHXQLVPSPKVSDTVVETIQCDSLXFTS*LKTQTKPTASTTRLYTTSASALSNCPHP 347
H + ++ + TV ETI S+ FTS + Q T+ T + +A ++
Sbjct: 791 HDTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQ-GTTSGTVEVVEPTAGTVTETIIS 849
Query: 348 PTVTLTT*FPSQ 383
+V T+ FP+Q
Sbjct: 850 GSVGYTSTFPAQ 861
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 216 TVVETIQCDSLXFTS*LKTQTKPTASTTRLYTTSASALSNCPHPPTVTLTT*FPSQ 383
TV ETI S+ FTS + Q T+ T + +A ++ +V T+ FP+Q
Sbjct: 912 TVTETIVSGSIPFTSTIPAQ-GTTSGTVEVVEPTAGTVTETIISGSVGYTSTFPAQ 966
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 216 TVVETIQCDSLXFTS*LKTQTKPTASTTRLYTTSASALSNCPHPPTVTLTT*FPSQ 383
TV ETI S+ FTS + Q T+ T + +A ++ +V T+ FP+Q
Sbjct: 982 TVTETIVSGSIPFTSTIPAQ-GTTSGTVEVVEPTAGTVTETIISGSVGYTSTFPAQ 1036
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 4.8
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 257 QLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 436
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 437 RKLAVNMV 460
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 67 PPGLPTXTFPRWRHRVRXGHPPHLKDSV 150
PP L +FPR + P HLKD++
Sbjct: 173 PPVLSNGSFPRQTNTAPLNPPVHLKDNI 200
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -2
Query: 717 HSTKYEEFLFWMLSICSSTSFMDMRPRKMAATV 619
+ST +E+ + W++++ SST MRP + ATV
Sbjct: 199 NSTVFEDIMSWVVAMSSST----MRPIRHTATV 227
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 611 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 736
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,124
Number of Sequences: 5004
Number of extensions: 58236
Number of successful extensions: 235
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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