Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P15
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   5.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.7  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 453 TWFPSRVSTSSCQVSLPSHPVEADSTV 533
           +W P  +  SSC++++   P +  S +
Sbjct: 147 SWKPPAIYKSSCEINVEYFPFDEQSCI 173


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 505 EGSETWHEEVETREGNHVYGQFSEISVQLTGEPKASGDT 389
           +GS T H E+E     H+     ++ V +   P+ S  T
Sbjct: 47  QGSRTTHNELEKNRRAHLRNCLEKLKVLVPLGPETSRHT 85


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 250 LRESHCMVSTTVSXTL 203
           +RESHCM  T  S  L
Sbjct: 74  IRESHCMTITFASFLL 89


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +3

Query: 429 LISENWP*TWFPSRVSTSSCQVSLPSHPVEADSTV 533
           LI  N    W P  +  SSC + +   P +  + +
Sbjct: 132 LIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCI 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,298
Number of Sequences: 438
Number of extensions: 4232
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)