Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P14
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
 Frame = +3

Query: 654 PPPPPXKXKKXXXPLXXGGXXFXPPPGGXVXXXXXXGGXXXKKKFXTXPPXGXPKK---- 821
           PPPPP +  +   P+  G      PP          G      +  + PP   P+     
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372

Query: 822 -----XXGGXXXVFNXGPPPPXXPPKXXP 893
                       V N   PPP  P +  P
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
 Frame = +3

Query: 621 PPXGEXXXN--IXPPPPPXKXK-KXXXPLXXGGXXFXPPP 731
           PP G    N  + PPPPP +       PL   G    PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 858 PPPPXXPPKXXPPNXGGXTXPP 923
           PPPP  PP   PP+      PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 618 PPPXGEXXXNIXPPPPPXKXKK 683
           PPP  E      PPPPP   KK
Sbjct: 14  PPPGFEPPSQPPPPPPPGYVKK 35



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
 Frame = +3

Query: 618 PPPXGEXXXNIXPPPPP---XKXKKXXXPLXXG 707
           PPP G    +  PPPPP    K +K   P   G
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,828
Number of Sequences: 5004
Number of extensions: 16208
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)