Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P13
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.13c |||mitochondrial inner membrane peptidase complex ca...   111   1e-25
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    81   2e-16
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    28   2.1  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    26   8.4  

>SPBC336.13c |||mitochondrial inner membrane peptidase complex
           catalytic subunit 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score =  111 bits (267), Expect = 1e-25
 Identities = 57/135 (42%), Positives = 86/135 (63%), Gaps = 3/135 (2%)
 Frame = +1

Query: 145 LPIGVTILDTVGYVARVEGISMQPVLNPES--MNTDYVFLSRWAVRDYHVKRGDVISLMS 318
           +P+ + +   V  V  +EG SM+P  NPE+  +  D V L +W  +DY  KRGDV+ L S
Sbjct: 26  VPVLMFVEQHVVSVGTIEGRSMKPAFNPETNMLQRDRVLLWKWN-KDY--KRGDVVILRS 82

Query: 319 PKDPNQKIIKRVVALQGDVVSTLGYKN-QYVKIPEGHCWVEGDHTGHTLDSNTFGPVSLX 495
           P++P + ++KRV+ ++ D++ T   K    V +PEGH WVEGD   H++DSN FGPVS  
Sbjct: 83  PENPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEGDEQFHSIDSNKFGPVSTG 142

Query: 496 LVNARAVCIVWPPSR 540
           L+ A+ + I++P SR
Sbjct: 143 LITAKVIAILFPFSR 157


>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
 Frame = +1

Query: 184 VARVEGISMQPVLNPESMNTDYVFLSRWAVRDYH-VKRGDVISLMSPKDPNQKIIKRVVA 360
           V    G SM P LN      ++V L +   R       GDV+    P D  Q + KR++ 
Sbjct: 28  VQMTSGPSMMPTLNSGG---EFVLLDKLHGRFARSCSVGDVVVSAKPSDSKQHVCKRIIG 84

Query: 361 LQGDVVST-LGYKNQYVKIPEGHCWVEGDHTGHTLDSNTFGPVSLXLVNARAVCIVWPPS 537
           + GD +       N+ + IP GH W+ GD+  H+LDS  +GPV + L+ A+ +  VWP  
Sbjct: 85  MPGDTIYVDPTSSNKKITIPLGHVWLAGDNIAHSLDSRNYGPVPMGLIKAKVIARVWPHP 144

Query: 538 RWQS 549
            W S
Sbjct: 145 HWMS 148


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 229 ESMNTDYVFLSRWAVRDYHVKRGDVISLMSPKD 327
           E    DY F+SR    +  +K+GD+I+++S  D
Sbjct: 225 EFCKADYEFMSRDPGVEMSLKKGDIIAILSKTD 257


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 187 ARVEGISMQPVLNPESMNTDYVFLSRWAVRDYHVKRGDVISLMSPKDPNQKIIKRVVALQ 366
           A   GIS + V  PE +    + L+     +     G ++ L  P   N++II   VA +
Sbjct: 58  ANEAGISCEHVNFPEDITEYDLLLAIKGFNEDPTVHGIIVQLPLPAHINEQIITEAVAPE 117

Query: 367 GDV 375
            DV
Sbjct: 118 KDV 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,061
Number of Sequences: 5004
Number of extensions: 66471
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)