Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P13
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-5|AAF60800.1|  152|Caenorhabditis elegans Hypothetical ...   111   7e-25
Z81475-6|CAB03913.2|  132|Caenorhabditis elegans Hypothetical pr...    74   2e-13
Z79757-9|CAB02123.3|  327|Caenorhabditis elegans Hypothetical pr...    30   2.6  

>AC024826-5|AAF60800.1|  152|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.8 protein.
          Length = 152

 Score =  111 bits (267), Expect = 7e-25
 Identities = 58/140 (41%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
 Frame = +1

Query: 142 GLPIGVTILDTVGYVARVEGISMQPVL---NPESMNTDYVFLSRWAVRDYHVKRGDVISL 312
           G  +  T  D VG+ A+V G SMQP L   +      D V+LS W +  Y    G +++ 
Sbjct: 13  GTCVVFTFFDVVGHPAQVVGNSMQPTLQGGDARWYKRDIVWLSTWNL--YKCSPGTILTF 70

Query: 313 MSPKDPNQKIIKRVVALQGDVVSTLGYKNQYVKIPEGHCWVEGDHTGHTLDSNTFGPVSL 492
           +SP+DP+   IKRV A++  +V           IP+GH W+EGD+  H  DSN +GPVS 
Sbjct: 71  VSPRDPDAVHIKRVTAVENAIVRPEKRPELITDIPKGHYWMEGDNPEHRHDSNVYGPVST 130

Query: 493 XLVNARAVCIVWPPSRWQSL 552
            LV  RA  I+WPP+RWQ L
Sbjct: 131 SLVKGRATHIIWPPNRWQRL 150


>Z81475-6|CAB03913.2|  132|Caenorhabditis elegans Hypothetical
           protein C24H11.6 protein.
          Length = 132

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 35/109 (32%), Positives = 63/109 (57%)
 Frame = +1

Query: 214 PVLNPESMNTDYVFLSRWAVRDYHVKRGDVISLMSPKDPNQKIIKRVVALQGDVVSTLGY 393
           P ++P   + D V   R+++R+ +V+ GD++  ++P+ P + + KR+ A +GD V++  +
Sbjct: 7   PSMHPTIHDGDLVLAERFSIRNKNVQVGDIVGCVNPQKPKELLCKRIAAKEGDPVTS--H 64

Query: 394 KNQYVKIPEGHCWVEGDHTGHTLDSNTFGPVSLXLVNARAVCIVWPPSR 540
                ++P GH ++ GD+   + DS  FGPV   LV  R    +WPP R
Sbjct: 65  LLPSGRVPIGHVFLRGDNGPVSTDSRHFGPVPEALVQIRLSLRIWPPER 113


>Z79757-9|CAB02123.3|  327|Caenorhabditis elegans Hypothetical
           protein F55B12.2 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 29  NSLRF*SPIFNINTDMFVRNKVAAYSCGLKVYASLL 136
           N L F  P  NI +D+F+  K    SCG++   S L
Sbjct: 56  NHLDFIQPYVNIRSDLFIAPKYKILSCGIRKSMSQL 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,325,533
Number of Sequences: 27780
Number of extensions: 379790
Number of successful extensions: 771
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)