Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_P10
(894 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-... 153 8e-36
UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4; ... 142 1e-32
UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4; Endopterygot... 115 1e-24
UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular orga... 112 1e-23
UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular o... 105 2e-21
UniRef50_O46173 Cluster: Y-box protein; n=5; cellular organisms|... 105 2e-21
UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box prot... 104 3e-21
UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhanc... 104 4e-21
UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: ... 104 4e-21
UniRef50_P67809 Cluster: Nuclease sensitive element-binding prot... 103 5e-21
UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias... 103 6e-21
UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona intesti... 103 8e-21
UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius auratus... 102 1e-20
UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21; Tetrapod... 101 2e-20
UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular org... 99 8e-20
UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box fact... 97 4e-19
UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ ce... 91 3e-17
UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;... 86 1e-15
UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n... 84 4e-15
UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n... 76 1e-12
UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box ... 65 2e-09
UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia japo... 61 4e-08
UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1; ... 60 6e-08
UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis el... 60 7e-08
UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;... 58 2e-07
UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep: MG... 56 9e-07
UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;... 50 8e-05
UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus laev... 48 3e-04
UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n... 48 4e-04
UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep: ... 48 4e-04
UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona intesti... 45 0.002
UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella ve... 43 0.012
UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus lu... 42 0.016
UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB... 42 0.021
UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome s... 41 0.049
UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2; ... 41 0.049
UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12; Bacteria... 40 0.086
UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triti... 40 0.086
UniRef50_O65639 Cluster: Glycine-rich protein; n=8; Magnoliophyt... 39 0.20
UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein; ... 38 0.35
UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6; c... 37 0.60
UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain ... 37 0.60
UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n... 37 0.80
UniRef50_UPI0000589074 Cluster: PREDICTED: similar to ENSANGP000... 37 0.80
UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3; ... 37 0.80
UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein; ... 37 0.80
UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1; Ostre... 37 0.80
UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=... 36 1.1
UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1; ma... 36 1.1
UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3; Gammaproteobac... 36 1.4
UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2; Acti... 36 1.8
UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:... 36 1.8
UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein; ... 36 1.8
UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular... 36 1.8
UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein; ... 35 2.4
UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep: AG... 35 2.4
UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2; ... 35 2.4
UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2; M... 35 2.4
UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78; B... 35 3.2
UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2; Thei... 35 3.2
UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n... 35 3.2
UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:... 34 4.3
UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep: ... 34 4.3
UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6; Streptoc... 34 4.3
UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154; Ba... 34 4.3
UniRef50_P39158 Cluster: Cold shock protein cspC; n=41; Bacteria... 34 4.3
UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26; cel... 34 4.3
UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2; C... 34 5.6
UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp. M... 34 5.6
UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7; Bact... 34 5.6
UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59; Alphapro... 34 5.6
UniRef50_P72188 Cluster: Cold shock protein capA; n=23; Proteoba... 34 5.6
UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep... 33 7.4
UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44; Bacteria... 33 7.4
UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein; ... 33 7.4
UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28; Bac... 33 7.4
UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38; Gam... 33 7.4
UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39; Gammapro... 33 7.4
UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2; Bacteroi... 33 9.8
UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein; ... 33 9.8
UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5; Deinoc... 33 9.8
UniRef50_Q2UH22 Cluster: Alkaline phosphatase; n=1; Aspergillus ... 33 9.8
>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
protein - Bombyx mori (Silk moth)
Length = 272
Score = 153 bits (370), Expect = 8e-36
Identities = 70/72 (97%), Positives = 71/72 (98%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA
Sbjct: 60 KEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 119
Query: 499 DKRRGYHRQYFP 534
DKRRGYHRQYFP
Sbjct: 120 DKRRGYHRQYFP 131
Score = 63.7 bits (148), Expect = 6e-09
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
VIAEKVSGTVKWFNVKSGYGFINRNDTK
Sbjct: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTK 60
>UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4;
cellular organisms|Rep: Putative uncharacterized protein
- Lonomia obliqua (Moth)
Length = 254
Score = 142 bits (344), Expect = 1e-32
Identities = 65/72 (90%), Positives = 68/72 (94%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ DVFVHQTAI RNNPRKAVRSVGDGE VEFAVVAGEKG EAAGVTGPGGEPVKGSPYAA
Sbjct: 51 KEDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAVVAGEKGCEAAGVTGPGGEPVKGSPYAA 110
Query: 499 DKRRGYHRQYFP 534
DKRRGY+RQY+P
Sbjct: 111 DKRRGYYRQYYP 122
Score = 63.7 bits (148), Expect = 6e-09
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
VIAEKVSGTVKWFNVKSGYGFINRNDTK
Sbjct: 24 VIAEKVSGTVKWFNVKSGYGFINRNDTK 51
>UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4;
Endopterygota|Rep: Y-box protein Ct-p50 - Chironomus
tentans (Midge)
Length = 317
Score = 115 bits (277), Expect = 1e-24
Identities = 53/65 (81%), Positives = 58/65 (89%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ D+FVHQ+AI +NNP+KAVRSVGDGE VEF VVAGEKG EAA VTGP GEPVKGSPYAA
Sbjct: 52 KQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAGEKGSEAANVTGPEGEPVKGSPYAA 111
Query: 499 DKRRG 513
DKRRG
Sbjct: 112 DKRRG 116
Score = 57.6 bits (133), Expect = 4e-07
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
+IA KV+GTVKWFNVKSGYGFINRND K
Sbjct: 25 IIATKVTGTVKWFNVKSGYGFINRNDNK 52
>UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular
organisms|Rep: ENSANGP00000031633 - Anopheles gambiae
str. PEST
Length = 166
Score = 112 bits (269), Expect = 1e-23
Identities = 53/64 (82%), Positives = 57/64 (89%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 504
DVFVHQ+AIARNNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPVKGS YAA+K
Sbjct: 34 DVFVHQSAIARNNPKKAVRSVGDGEQVEFDVVIGEKGNEAANVTGPQGEPVKGSQYAAEK 93
Query: 505 RRGY 516
RRG+
Sbjct: 94 RRGF 97
Score = 54.0 bits (124), Expect = 5e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
VIA KV+G VKWFNVKSGYGFINR DT+
Sbjct: 5 VIATKVTGVVKWFNVKSGYGFINRGDTQ 32
>UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular
organisms|Rep: DNA-binding protein A - Homo sapiens
(Human)
Length = 372
Score = 105 bits (252), Expect = 2e-21
Identities = 51/71 (71%), Positives = 57/71 (80%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ DVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAA
Sbjct: 113 KEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAA 172
Query: 499 DKRRGYHRQYF 531
D+RR Y R Y+
Sbjct: 173 DRRR-YRRGYY 182
Score = 55.6 bits (128), Expect = 2e-06
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
V+A KV GTVKWFNV++GYGFINRNDTK
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTK 113
>UniRef50_O46173 Cluster: Y-box protein; n=5; cellular
organisms|Rep: Y-box protein - Drosophila melanogaster
(Fruit fly)
Length = 359
Score = 105 bits (251), Expect = 2e-21
Identities = 51/66 (77%), Positives = 56/66 (84%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
R DVFVHQ+AIA NNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV+GS +AA
Sbjct: 85 REDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAA 143
Query: 499 DKRRGY 516
DKRR +
Sbjct: 144 DKRRNF 149
Score = 58.8 bits (136), Expect = 2e-07
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
VIA KV+GTVKWFNVKSGYGFINRNDT+
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTR 85
>UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box protein
Ct-p40; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
to Y-box protein Ct-p40 - Nasonia vitripennis
Length = 335
Score = 104 bits (250), Expect = 3e-21
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 504
D+FV Q I+ N P KAVRSVGDGE VEF VV GEKG EAA VTGP GE VKGSPYAADK
Sbjct: 93 DIFVCQRCISNNLPSKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPDGEAVKGSPYAADK 152
Query: 505 RRGYHRQYF 531
RRGY RQY+
Sbjct: 153 RRGY-RQYY 160
Score = 51.6 bits (118), Expect = 3e-05
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRN 311
+IA KV+GTVKWFNVKSGYGFINR+
Sbjct: 64 IIANKVTGTVKWFNVKSGYGFINRS 88
>UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhancer
factor II; n=1; Gallus gallus|Rep: Rous sarcoma virus
transcription enhancer factor II - Gallus gallus
(Chicken)
Length = 298
Score = 104 bits (249), Expect = 4e-21
Identities = 51/71 (71%), Positives = 56/71 (78%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ DVFVHQTAI +NNPRK + SVGDGE VEF VV GEKG EAA VTGP G PV+GS YAA
Sbjct: 110 KEDVFVHQTAIKKNNPRKYLASVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAA 169
Query: 499 DKRRGYHRQYF 531
D+RR Y R YF
Sbjct: 170 DRRR-YRRGYF 179
Score = 55.6 bits (128), Expect = 2e-06
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
V+A KV GTVKWFNV++GYGFINRNDTK
Sbjct: 83 VLATKVLGTVKWFNVRNGYGFINRNDTK 110
>UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: DNA
binding protein - Canis familiaris (Dog)
Length = 96
Score = 104 bits (249), Expect = 4e-21
Identities = 50/71 (70%), Positives = 57/71 (80%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ DVFVHQTAI +NNPRK +RSVGDGE V+F VV GEKG EAA VTGP G PV+GS YAA
Sbjct: 15 KEDVFVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGEKGAEAANVTGPDGVPVEGSRYAA 74
Query: 499 DKRRGYHRQYF 531
D+RR Y R Y+
Sbjct: 75 DRRR-YRRGYY 84
Score = 34.3 bits (75), Expect = 4.3
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 276 NVKSGYGFINRNDTK 320
NV++GYGFINRNDTK
Sbjct: 1 NVRNGYGFINRNDTK 15
>UniRef50_P67809 Cluster: Nuclease sensitive element-binding protein
1; n=65; Coelomata|Rep: Nuclease sensitive
element-binding protein 1 - Homo sapiens (Human)
Length = 324
Score = 103 bits (248), Expect = 5e-21
Identities = 50/70 (71%), Positives = 57/70 (81%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ DVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAA
Sbjct: 81 KEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAA 140
Query: 499 DKRRGYHRQY 528
D R ++R+Y
Sbjct: 141 D--RNHYRRY 148
Score = 56.4 bits (130), Expect = 9e-07
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
VIA KV GTVKWFNV++GYGFINRNDTK
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTK 81
>UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias
latipes|Rep: Cold-shock domain protein - Oryzias latipes
(Medaka fish) (Japanese ricefish)
Length = 366
Score = 103 bits (247), Expect = 6e-21
Identities = 49/72 (68%), Positives = 57/72 (79%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ DVFVHQTAI +NNPRK +RSVGDGE VEF V+ KG EAA VTGPGG PVKGS YA
Sbjct: 25 KEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSRYAP 84
Query: 499 DKRRGYHRQYFP 534
+KRR + R++FP
Sbjct: 85 NKRR-FRRRFFP 95
Score = 50.8 bits (116), Expect = 5e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3
Query: 252 VSGTVKWFNVKSGYGFINRNDTK 320
V GTVKWFNV++GYGFINRNDTK
Sbjct: 3 VQGTVKWFNVRNGYGFINRNDTK 25
>UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona
intestinalis|Rep: Y-box protein 1/2/3 - Ciona
intestinalis (Transparent sea squirt)
Length = 320
Score = 103 bits (246), Expect = 8e-21
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGSPYA 495
+ DVF+HQTAI +NNP+K +RSVGDGE VEF VV GEKG EAA VTGP GEPVKGS YA
Sbjct: 48 KEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEPVKGSKYA 107
Query: 496 ADKRRGYHRQYFP 534
AD+RR Y +Y P
Sbjct: 108 ADRRR-YKPRYKP 119
Score = 47.6 bits (108), Expect = 4e-04
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
V+A SG VKWFNV++GYGF+NR+D K
Sbjct: 21 VLASHCSGVVKWFNVRNGYGFVNRDDNK 48
>UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius
auratus|Rep: Y box protein 2 - Carassius auratus
(Goldfish)
Length = 297
Score = 102 bits (245), Expect = 1e-20
Identities = 49/72 (68%), Positives = 57/72 (79%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ DVFVHQTAI +NNPRK +RSVGDGE VEF VV KG EAA VTGPGG PVKGS YA
Sbjct: 43 KEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEAAKGSEAANVTGPGGIPVKGSRYAP 102
Query: 499 DKRRGYHRQYFP 534
+KRR + R+++P
Sbjct: 103 NKRR-FRRRFYP 113
Score = 54.4 bits (125), Expect = 4e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
VIA V GTVKWFNV++GYGFINRNDTK
Sbjct: 16 VIATGVEGTVKWFNVRNGYGFINRNDTK 43
>UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21;
Tetrapoda|Rep: Y-box-binding protein 2 - Homo sapiens
(Human)
Length = 364
Score = 101 bits (243), Expect = 2e-20
Identities = 49/72 (68%), Positives = 56/72 (77%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ DVFVHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA
Sbjct: 116 KEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAP 175
Query: 499 DKRRGYHRQYFP 534
++R+ R++ P
Sbjct: 176 NRRKS--RRFIP 185
Score = 53.2 bits (122), Expect = 9e-06
Identities = 22/28 (78%), Positives = 26/28 (92%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
V+A +V GTVKWFNV++GYGFINRNDTK
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINRNDTK 116
>UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular
organisms|Rep: Y-box factor homolog - Aplysia
californica (California sea hare)
Length = 253
Score = 99 bits (238), Expect = 8e-20
Identities = 48/72 (66%), Positives = 55/72 (76%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ DVFVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G V+GS YAA
Sbjct: 55 KEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYAA 114
Query: 499 DKRRGYHRQYFP 534
D+RR ++P
Sbjct: 115 DRRRFRRGGWYP 126
Score = 57.6 bits (133), Expect = 4e-07
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
+IA +VSGTVKWFNVKSGYGFINR+DTK
Sbjct: 28 IIASQVSGTVKWFNVKSGYGFINRDDTK 55
>UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box factor;
n=4; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Y-Box factor - Strongylocentrotus purpuratus
Length = 326
Score = 97.5 bits (232), Expect = 4e-19
Identities = 48/64 (75%), Positives = 50/64 (78%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ DVFVHQ+AI RNNPRK RSVGDGE VEF VV G KG EAA VTGP G PV GS YAA
Sbjct: 46 KEDVFVHQSAIVRNNPRKYQRSVGDGEVVEFDVVEGTKGNEAARVTGPEGAPVVGSKYAA 105
Query: 499 DKRR 510
DKRR
Sbjct: 106 DKRR 109
Score = 57.2 bits (132), Expect = 5e-07
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
V+A KVSGTVKWFNVK+GYGFINR+DTK
Sbjct: 19 VLATKVSGTVKWFNVKNGYGFINRDDTK 46
>UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ
cell-specific Y-box-binding protein) (Contrin) (MSY2
homolog).; n=1; Xenopus tropicalis|Rep: Y-box-binding
protein 2 (Germ cell-specific Y-box-binding protein)
(Contrin) (MSY2 homolog). - Xenopus tropicalis
Length = 199
Score = 91.5 bits (217), Expect = 3e-17
Identities = 45/64 (70%), Positives = 49/64 (76%)
Frame = +1
Query: 343 TAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHR 522
TAI RNNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PVKGS +A ++RR R
Sbjct: 70 TAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAPNRRRFRRR 129
Query: 523 QYFP 534
Y P
Sbjct: 130 FYRP 133
>UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-1 - Caenorhabditis elegans
Length = 208
Score = 86.2 bits (204), Expect = 1e-15
Identities = 39/60 (65%), Positives = 45/60 (75%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 504
D+FVHQTAI NNP K +RS+GD E V F +V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 45 DIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104
Score = 51.2 bits (117), Expect = 3e-05
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDT 317
V A KV GTVKWFNVK+GYGFINR DT
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDT 42
>UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B3F UniRef100 entry -
Rattus norvegicus
Length = 292
Score = 84.2 bits (199), Expect = 4e-15
Identities = 40/68 (58%), Positives = 48/68 (70%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
+ DVFVHQTA+ +N+PRK +RSVGD E VEF V GEK EAA VTG GG PV+ S Y A
Sbjct: 53 KEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEKDVEAASVTGLGGVPVQDSKYTA 112
Query: 499 DKRRGYHR 522
D+ H+
Sbjct: 113 DRNHCKHQ 120
Score = 35.1 bits (77), Expect = 2.4
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
VIA KV GT+K V +G G INRNDTK
Sbjct: 26 VIATKVLGTMKCSIVWNGCGLINRNDTK 53
>UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC181B UniRef100 entry -
Rattus norvegicus
Length = 210
Score = 76.2 bits (179), Expect = 1e-12
Identities = 37/58 (63%), Positives = 43/58 (74%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 498
DVFVHQTAI +NNPRK + + GD E VEF V+ GEK EAA + GPGG V+GS YAA
Sbjct: 53 DVFVHQTAIKKNNPRKYLHTTGDRETVEFDVIEGEKDAEAANIIGPGG--VQGSQYAA 108
>UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box
protein - Dugesia japonica (Planarian)
Length = 266
Score = 65.3 bits (152), Expect = 2e-09
Identities = 32/66 (48%), Positives = 43/66 (65%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 504
D+F+HQ+AI ++NP +SVG+GE + F +V G KG EAA V+ G+ VKGS YA
Sbjct: 53 DIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYALRY 112
Query: 505 RRGYHR 522
RG R
Sbjct: 113 PRGRGR 118
Score = 41.1 bits (92), Expect = 0.037
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 252 VSGTVKWFNVKSGYGFINRNDTK 320
++G VKWFNVK GYGF+ RND +
Sbjct: 29 ITGKVKWFNVKRGYGFVCRNDNQ 51
>UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia
japonica|Rep: Y-Box factor protein - Dugesia japonica
(Planarian)
Length = 178
Score = 60.9 bits (141), Expect = 4e-08
Identities = 32/57 (56%), Positives = 39/57 (68%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 495
DVFVHQ+AI+R P K +S+G+ E V F VV G KG EA VTGP G+ V GS +A
Sbjct: 27 DVFVHQSAISRCQPGKQ-KSLGEDEDVLFDVVKGSKGNEAMNVTGPNGDAVLGSKFA 82
Score = 38.3 bits (85), Expect = 0.26
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 258 GTVKWFNVKSGYGFINRND 314
G VKW+NVK GYGFI+R+D
Sbjct: 5 GKVKWYNVKKGYGFIHRDD 23
>UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 60.5 bits (140), Expect = 6e-08
Identities = 31/66 (46%), Positives = 43/66 (65%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 504
D+FVH++ I + N +S+GDGE VEF ++A + VTGPG +PVKGSP+ A
Sbjct: 58 DIFVHKSCIFKPNRNHFTKSIGDGEIVEFGLIASK-------VTGPGFKPVKGSPFVA-- 108
Query: 505 RRGYHR 522
+RG HR
Sbjct: 109 KRGGHR 114
Score = 43.6 bits (98), Expect = 0.007
Identities = 15/25 (60%), Positives = 22/25 (88%)
Frame = +3
Query: 243 AEKVSGTVKWFNVKSGYGFINRNDT 317
+++++GTVKWFN K G+GFI R+DT
Sbjct: 31 SKRITGTVKWFNAKDGFGFITRHDT 55
>UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis
elegans|Rep: Y-box protein 2 - Caenorhabditis elegans
Length = 267
Score = 60.1 bits (139), Expect = 7e-08
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 492
D+FVHQTAIA++ K +R++GD E V F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 90 DIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146
>UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-4 - Caenorhabditis elegans
Length = 294
Score = 58.4 bits (135), Expect = 2e-07
Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 495
D FVHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 116 DFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep:
MGC115344 protein - Xenopus laevis (African clawed frog)
Length = 221
Score = 56.4 bits (130), Expect = 9e-07
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
V+A KV GTVKWFNV++GYGFINRNDTK
Sbjct: 31 VLATKVQGTVKWFNVRNGYGFINRNDTK 58
Score = 46.4 bits (105), Expect = 0.001
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +1
Query: 430 KGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 531
+G EAA VTGP G PV+GS YAAD+RR Y R Y+
Sbjct: 65 QGAEAANVTGPKGAPVQGSRYAADRRR-YRRGYY 97
>UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein - Ornithorhynchus anatinus
Length = 502
Score = 50.0 bits (114), Expect = 8e-05
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTKXRCVCAS 341
V+A +V GTVKWFNV++GYGFINR + C C S
Sbjct: 56 VLATQVLGTVKWFNVRNGYGFINRYRSAPGCGCGS 90
>UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus
laevis|Rep: LOC100036881 protein - Xenopus laevis
(African clawed frog)
Length = 131
Score = 48.0 bits (109), Expect = 3e-04
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG--FEAAGVTGPGGEPVKGSP 489
D+FVHQ+ I + RS+ +GE VEF+V+ E+ +AA VTGP G V+G+P
Sbjct: 28 DIFVHQSTIHADG----FRSLAEGEPVEFSVITDERSGKLKAADVTGPNGAAVRGAP 80
Score = 35.5 bits (78), Expect = 1.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 249 KVSGTVKWFNVKSGYGFINRND 314
K++GT KWFN + GYGF+ +D
Sbjct: 3 KLTGTCKWFNAEKGYGFLTPDD 24
>UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B82 UniRef100 entry -
Rattus norvegicus
Length = 147
Score = 47.6 bits (108), Expect = 4e-04
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDTK 320
VIA KV G V WFNV++GY FINRNDTK
Sbjct: 91 VIAMKVLGIVTWFNVRNGYVFINRNDTK 118
Score = 41.1 bits (92), Expect = 0.037
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +1
Query: 319 RXDVFVHQTAIARNNPRKAVRSVGDGEAVE 408
+ D FVHQT I +NNP K + SVGDGE VE
Sbjct: 118 KEDTFVHQTVIKKNNP-KYLHSVGDGETVE 146
>UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep:
Lin-28 homolog B - Homo sapiens (Human)
Length = 250
Score = 47.6 bits (108), Expect = 4e-04
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 486
DVFVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 61 DVFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona
intestinalis|Rep: Zinc finger protein - Ciona
intestinalis (Transparent sea squirt)
Length = 193
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 304 TGMTPRXDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 483
T + DVFVHQ++I + RS+ +G+ V+F +KG EA V GPGGE + G
Sbjct: 47 TSSQEKTDVFVHQSSI----DMEGFRSLQEGDRVKFWYKPSKKGLEAVKVVGPGGEKLVG 102
Query: 484 S 486
+
Sbjct: 103 A 103
>UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 671
Score = 42.7 bits (96), Expect = 0.012
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +1
Query: 271 GSTSRVDMVSSTGMTPRXD----VFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 438
GS +++ G R D VFVHQ+AI + RS+ +GE V+ + +KG
Sbjct: 485 GSVKWFNLIKGFGFITRDDGGEDVFVHQSAIKASG----YRSLEEGEHVQLTISNSDKGK 540
Query: 439 EAAGVTGPGGEPVKGS 486
A VT PGG VKG+
Sbjct: 541 VAICVTSPGGGNVKGA 556
Score = 34.3 bits (75), Expect = 4.3
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +3
Query: 255 SGTVKWFNVKSGYGFINRND 314
+G+VKWFN+ G+GFI R+D
Sbjct: 484 TGSVKWFNLIKGFGFITRDD 503
>UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 106
Score = 42.3 bits (95), Expect = 0.016
Identities = 25/62 (40%), Positives = 34/62 (54%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 504
++FVHQT I+ RSV +GE VE+ V + +A VTGP G VKG+P +
Sbjct: 29 EIFVHQTGISC----AGFRSVWEGEEVEYDVDDTDFAPKAVNVTGPDGVAVKGAPRRRHR 84
Query: 505 RR 510
R
Sbjct: 85 NR 86
>UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB
fold; n=2; Cryptosporidium|Rep: Cold shock RNA binding
domain of the OB fold - Cryptosporidium parvum Iowa II
Length = 135
Score = 41.9 bits (94), Expect = 0.021
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGSPYAAD 501
D+FVHQ +N + RS+ E VE+ + +KG +A V+GP G PVKG D
Sbjct: 35 DIFVHQ----QNIKVEGFRSLAQDERVEYEIETDDKGRRKAVNVSGPNGAPVKG-----D 85
Query: 502 KRRGYHR 522
+RRG R
Sbjct: 86 RRRGRGR 92
>UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome
shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 14
SCAF14723, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 206
Score = 40.7 bits (91), Expect = 0.049
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +1
Query: 379 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 486
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 111 RSLKEGEQVEFTFKKSTKGLESLRVTGPGGGPCAGS 146
>UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 238
Score = 40.7 bits (91), Expect = 0.049
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPV 477
D+FVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG V
Sbjct: 30 DLFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVNVTAPGGRAV 77
Score = 35.9 bits (79), Expect = 1.4
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 243 AEKVSGTVKWFNVKSGYGFINRND 314
+E+V GTVKWF+ G+GFI +D
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDD 26
>UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12;
Bacteria|Rep: Cold shock protein CspA - Pseudomonas
stutzeri (strain A1501)
Length = 136
Score = 39.9 bits (89), Expect = 0.086
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 237 VIAEKVSGTVKWFNVKSGYGFINRND 314
V+AE+ +GTVKWFN GYGFI R +
Sbjct: 67 VMAERETGTVKWFNDAKGYGFIQRGN 92
Score = 39.1 bits (87), Expect = 0.15
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTG 459
DVFVH AI + R S+ +G+ VEF+V+ G+KG +A V G
Sbjct: 95 DVFVHYRAIRGDGHR----SLAEGQQVEFSVIQGQKGLQAEDVAG 135
>UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triticum
aestivum|Rep: Cold shock domain protein 3 - Triticum
aestivum (Wheat)
Length = 231
Score = 39.9 bits (89), Expect = 0.086
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 240 IAEKVSGTVKWFNVKSGYGFINRND 314
+ E+V GTVKWFNV G+GFI+ +D
Sbjct: 1 MGERVKGTVKWFNVTKGFGFISPDD 25
>UniRef50_O65639 Cluster: Glycine-rich protein; n=8;
Magnoliophyta|Rep: Glycine-rich protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 299
Score = 38.7 bits (86), Expect = 0.20
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK 480
++FVHQ++I + RS+ G+AVEFA+ G G +A VT PGG +K
Sbjct: 35 ELFVHQSSIVS----EGYRSLTVGDAVEFAITQGSDGKTKAVNVTAPGGGSLK 83
>UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein;
n=5; cellular organisms|Rep: Cold-shock DNA-binding
domain protein - Psychrobacter cryohalolentis (strain
K5)
Length = 71
Score = 37.9 bits (84), Expect = 0.35
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 453
D+FVH AI + RS+ DGE VEF+VV G+KG +A V
Sbjct: 28 DIFVHFRAIQGDG----YRSLKDGEKVEFSVVEGDKGLQAEEV 66
>UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6;
cellular organisms|Rep: Cold-shock protein, DNA-binding
- Enterococcus faecium DO
Length = 35
Score = 37.1 bits (82), Expect = 0.60
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 255 SGTVKWFNVKSGYGFINRND 314
+GTVKWFN + G+GFI+R D
Sbjct: 3 NGTVKWFNAEKGFGFISRED 22
>UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain
protein precursor; n=1; Methylobacterium sp. 4-46|Rep:
Putative cold-shock DNA-binding domain protein precursor
- Methylobacterium sp. 4-46
Length = 242
Score = 37.1 bits (82), Expect = 0.60
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVT 456
DVFVH++A+A R + S+ +G+ V VV G+KG EA +T
Sbjct: 200 DVFVHRSALA----RAGLDSLAEGQQVTMGVVEGQKGREAQSIT 239
>UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n=1;
unknown|Rep: UPI00015BD510 UniRef100 entry - unknown
Length = 86
Score = 36.7 bits (81), Expect = 0.80
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 252 VSGTVKWFNVKSGYGFINRNDTK 320
++GTVKWF+ + GYGF+ R+D +
Sbjct: 18 ITGTVKWFSKEKGYGFLTRDDNQ 40
>UniRef50_UPI0000589074 Cluster: PREDICTED: similar to
ENSANGP00000011455; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000011455
- Strongylocentrotus purpuratus
Length = 234
Score = 36.7 bits (81), Expect = 0.80
Identities = 24/54 (44%), Positives = 26/54 (48%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 486
DVFVHQ I RS+ E VE+ EKG EA VTG G KGS
Sbjct: 87 DVFVHQRVIKM----VGYRSLDTNEEVEYKFQFSEKGREATTVTGVDGGDCKGS 136
>UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3;
Bacteria|Rep: Cold-shock domain family protein -
Neptuniibacter caesariensis
Length = 149
Score = 36.7 bits (81), Expect = 0.80
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 246 EKVSGTVKWFNVKSGYGFINRND 314
++ GTVKWFNV G+GFI R +
Sbjct: 81 DREQGTVKWFNVSKGFGFITRGE 103
>UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein;
n=1; Ostreococcus tauri|Rep: Putative nucleic acid
binding protein - Ostreococcus tauri
Length = 125
Score = 36.7 bits (81), Expect = 0.80
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAV--RSVGDGEAVEFAVV---AGEKGFEAAGVTGPGGEPVKGSP 489
DVFVHQ+A+ R+ R G++VEF V ++ +A VTG GG P+K P
Sbjct: 35 DVFVHQSALKMEGFRRTDGRRFATQGDSVEFDVEHESPTDERLKAVCVTGIGGAPLKAPP 94
Query: 490 YA----ADKRRGYHRQ 525
+ K+RG R+
Sbjct: 95 RTNYRRSSKKRGPRRE 110
>UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1;
Ostreococcus tauri|Rep: Glycogen debranching enzyme -
Ostreococcus tauri
Length = 141
Score = 36.7 bits (81), Expect = 0.80
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKA--VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 489
DVFVHQ+ + + R VR G+ +EF + E+ A VTGP G P+K +P
Sbjct: 64 DVFVHQSELQMDGFRSVWEVRLQQAGDEIEFELDDDERR-RAKNVTGPAGAPLKKTP 119
>UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=1;
uncultured bacterium BAC17H8|Rep: Predicted cold shock
family protein - uncultured bacterium BAC17H8
Length = 83
Score = 36.3 bits (80), Expect = 1.1
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 258 GTVKWFNVKSGYGFINRND 314
GTVKWFN + GYGFIN ++
Sbjct: 18 GTVKWFNTQKGYGFINPDE 36
>UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Cold-shock
DNA-binding protein - marine gamma proteobacterium
HTCC2143
Length = 144
Score = 36.3 bits (80), Expect = 1.1
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 258 GTVKWFNVKSGYGFINR 308
GTVKWFNV GYGF+ R
Sbjct: 79 GTVKWFNVSKGYGFVTR 95
Score = 33.1 bits (72), Expect = 9.8
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 453
++FVH +I+ N RK +R +G+ +EF+VV G+KG +A V
Sbjct: 100 EIFVHFRSISGNG-RKVLR---EGQKIEFSVVDGDKGPQAEDV 138
>UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3;
Gammaproteobacteria|Rep: Cold shock protein - Vibrio
angustum S14
Length = 68
Score = 35.9 bits (79), Expect = 1.4
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 249 KVSGTVKWFNVKSGYGFINRNDTK 320
K++GTVKWFN G+GFI+ D K
Sbjct: 3 KLTGTVKWFNDDKGFGFISGTDGK 26
>UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 75
Score = 35.9 bits (79), Expect = 1.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 240 IAEKVSGTVKWFNVKSGYGFINRND 314
++E + GTVKWF+ + GYGFI D
Sbjct: 1 MSETLQGTVKWFSAQKGYGFITGED 25
>UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces coelicolor
Length = 162
Score = 35.5 bits (78), Expect = 1.8
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGE 471
DVF+H + P ++VRS G VEF V +GE+G +A+G+ P GE
Sbjct: 46 DVFLHVNDLLI--PEESVRS---GLVVEFEVESGERGLKASGIRLPEGE 89
>UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:
Cold shock protein - Oceanobacter sp. RED65
Length = 171
Score = 35.5 bits (78), Expect = 1.8
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 258 GTVKWFNVKSGYGFINRND 314
G VKWFNVK G+GFI R++
Sbjct: 108 GLVKWFNVKKGFGFITRDN 126
>UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein;
n=30; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 249
Score = 35.5 bits (78), Expect = 1.8
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 246 EKVSGTVKWFNVKSGYGFINRND 314
E+ SGTVK+FN G+GFI R+D
Sbjct: 179 ERTSGTVKFFNTTKGFGFIARDD 201
>UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular
organisms|Rep: Glycine-rich protein 2b - Arabidopsis
thaliana (Mouse-ear cress)
Length = 201
Score = 35.5 bits (78), Expect = 1.8
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGS 486
D+FVHQ++I + RS+ E+VEF V G +A V+GP G PV+G+
Sbjct: 39 DLFVHQSSIRS----EGFRSLAAEESVEFDVEVDNSGRPKAIEVSGPDGAPVQGN 89
>UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 70
Score = 35.1 bits (77), Expect = 2.4
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 255 SGTVKWFNVKSGYGFINRND 314
+GTVKWFNV+ G+GFI +D
Sbjct: 3 TGTVKWFNVQKGFGFIAPDD 22
>UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep:
AGR_C_161p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 163
Score = 35.1 bits (77), Expect = 2.4
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 255 SGTVKWFNVKSGYGFINRND 314
+GTVKWFN GYGFI +D
Sbjct: 97 TGTVKWFNATKGYGFIQPDD 116
>UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Ruminococcus obeum ATCC 29174
Length = 66
Score = 35.1 bits (77), Expect = 2.4
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 258 GTVKWFNVKSGYGFINRND 314
GTVKWFN + GYGFI D
Sbjct: 4 GTVKWFNAEKGYGFITGED 22
>UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2;
Marinomonas|Rep: Cold-shock protein, DNA-binding -
Marinomonas sp. MED121
Length = 79
Score = 35.1 bits (77), Expect = 2.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 240 IAEKVSGTVKWFNVKSGYGFINRND 314
+ +K+ GTVKWFN G GFI R++
Sbjct: 1 MTDKLKGTVKWFNDSKGVGFIQRDN 25
>UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 189
Score = 35.1 bits (77), Expect = 2.4
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVKG 483
D+FVHQT+I + R++ +GE VEFAV GE G +A VT G G
Sbjct: 31 DLFVHQTSIRSDG----FRTLSEGETVEFAVDHGEDGRTKAVEVTAVRGSYSSG 80
>UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78;
Bacteria|Rep: Cold shock DNA binding protein -
Rhodopseudomonas palustris
Length = 84
Score = 34.7 bits (76), Expect = 3.2
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 258 GTVKWFNVKSGYGFINRND 314
GTVKWFN GYGFI +D
Sbjct: 18 GTVKWFNATKGYGFIQPDD 36
>UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2;
Theileria|Rep: Cold shock protein, putative - Theileria
annulata
Length = 95
Score = 34.7 bits (76), Expect = 3.2
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 486
DVFVHQ+ I + RS+ + E VE V+ +A VTGP G V G+
Sbjct: 27 DVFVHQSEIYADG----FRSLHENEKVELEVIMDNNRKKAIHVTGPNGTHVTGT 76
>UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n=2;
cellular organisms|Rep: Cold shock NA binding domain
protein - Aspergillus clavatus
Length = 125
Score = 34.7 bits (76), Expect = 3.2
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 246 EKVSGTVKWFNVKSGYGFI 302
E+ +GTVKWFN + GYGFI
Sbjct: 58 ERQNGTVKWFNDEKGYGFI 76
>UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:
Cold shock protein - Methylococcus capsulatus
Length = 69
Score = 34.3 bits (75), Expect = 4.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 240 IAEKVSGTVKWFNVKSGYGFINRND 314
++++ GTVKWFN G+GFI R +
Sbjct: 1 MSQQQQGTVKWFNESKGFGFIQREN 25
>UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep:
Cold shock protein - Arthrobacter globiformis
Length = 67
Score = 34.3 bits (75), Expect = 4.3
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 258 GTVKWFNVKSGYGFINRNDT 317
GTVKWFN + G+GFI +D+
Sbjct: 4 GTVKWFNAEKGFGFITPDDS 23
>UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6;
Streptococcus thermophilus|Rep: Cold shock protein CspSt
- Streptococcus thermophilus
Length = 21
Score = 34.3 bits (75), Expect = 4.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 255 SGTVKWFNVKSGYGFINRND 314
+GTVKWFN + G+GFI D
Sbjct: 2 NGTVKWFNAEKGFGFITSED 21
>UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154;
Bacteria|Rep: Cold shock-like protein cspG - Shigella
flexneri
Length = 70
Score = 34.3 bits (75), Expect = 4.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 240 IAEKVSGTVKWFNVKSGYGFINRND 314
++ K++G VKWFN G+GFI +D
Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDD 25
Score = 33.5 bits (73), Expect = 7.4
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 453
DVFVH TAI N R++ + + VEF++ G++G AA V
Sbjct: 29 DVFVHFTAIQSNE----FRTLNENQKVEFSIEQGQRGPAAANV 67
>UniRef50_P39158 Cluster: Cold shock protein cspC; n=41;
Bacteria|Rep: Cold shock protein cspC - Bacillus
subtilis
Length = 66
Score = 34.3 bits (75), Expect = 4.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 258 GTVKWFNVKSGYGFINRND 314
GTVKWFN + G+GFI R +
Sbjct: 4 GTVKWFNAEKGFGFIEREN 22
>UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26;
cellular organisms|Rep: Cold shock-like protein cspC -
Bacillus anthracis
Length = 65
Score = 34.3 bits (75), Expect = 4.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 252 VSGTVKWFNVKSGYGFINRND 314
+ G VKWFN + G+GFI R D
Sbjct: 1 MQGRVKWFNAEKGFGFIERED 21
>UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2;
Clostridium|Rep: Cold-shock protein, DNA-binding -
Clostridium phytofermentans ISDg
Length = 70
Score = 33.9 bits (74), Expect = 5.6
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 255 SGTVKWFNVKSGYGFINRND 314
+GTVKW++ + GYGF++ ND
Sbjct: 5 TGTVKWYDSERGYGFVSTND 24
>UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp.
MED297|Rep: Cold shock protein - Reinekea sp. MED297
Length = 153
Score = 33.9 bits (74), Expect = 5.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 246 EKVSGTVKWFNVKSGYGFINRND 314
++ G VKWFNV G+GF+ R++
Sbjct: 84 DREEGLVKWFNVSKGFGFVTRDN 106
>UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7;
Bacteria|Rep: Cold shock-like protein cspJ - Salmonella
typhimurium
Length = 70
Score = 33.9 bits (74), Expect = 5.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 249 KVSGTVKWFNVKSGYGFINRND 314
K++G VKWFN + G+GFI D
Sbjct: 4 KITGLVKWFNPEKGFGFITPKD 25
>UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59;
Alphaproteobacteria|Rep: Cold shock protein cspA -
Rhizobium meliloti (Sinorhizobium meliloti)
Length = 69
Score = 33.9 bits (74), Expect = 5.6
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 255 SGTVKWFNVKSGYGFINRND 314
SGTVKWFN G+GFI +D
Sbjct: 3 SGTVKWFNSTKGFGFIQPDD 22
>UniRef50_P72188 Cluster: Cold shock protein capA; n=23;
Proteobacteria|Rep: Cold shock protein capA -
Pseudomonas fragi
Length = 64
Score = 33.9 bits (74), Expect = 5.6
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 240 IAEKVSGTVKWFNVKSGYGFI 302
++++ SGTVKWFN + G+GFI
Sbjct: 1 MSQRQSGTVKWFNDEKGFGFI 21
>UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep:
Cold shock protein B - Streptomyces coelicolor
Length = 127
Score = 33.5 bits (73), Expect = 7.4
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 255 SGTVKWFNVKSGYGFINRND 314
+G VKWFN + G+GF++R+D
Sbjct: 3 TGKVKWFNSEKGFGFLSRDD 22
>UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44;
Bacteria|Rep: Cold shock-like protein - Acinetobacter
sp. (strain ADP1)
Length = 69
Score = 33.5 bits (73), Expect = 7.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 240 IAEKVSGTVKWFNVKSGYGFINRN 311
++ V+GTVKWFN G+GFI ++
Sbjct: 1 MSNSVNGTVKWFNEVKGFGFIQQD 24
>UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein;
n=2; Marinomonas|Rep: Cold-shock DNA-binding domain
protein - Marinomonas sp. MED121
Length = 97
Score = 33.5 bits (73), Expect = 7.4
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 252 VSGTVKWFNVKSGYGFINR 308
VSG VKWFN + G+GFI R
Sbjct: 33 VSGIVKWFNDEKGFGFIER 51
>UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28;
Bacteria|Rep: Cold shock-like protein cspE - Shigella
flexneri
Length = 69
Score = 33.5 bits (73), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 249 KVSGTVKWFNVKSGYGFINRND 314
K+ G VKWFN G+GFI D
Sbjct: 3 KIKGNVKWFNESKGFGFITPED 24
>UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38;
Gammaproteobacteria|Rep: Cold shock-like protein cspC -
Shigella flexneri
Length = 69
Score = 33.5 bits (73), Expect = 7.4
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVT 456
DVFVH +AI N ++++ +G+ VEF + G+KG A VT
Sbjct: 28 DVFVHFSAIQGNG----LKTLAEGQNVEFEIQDGQKGPAAVNVT 67
>UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39;
Gammaproteobacteria|Rep: Cold shock protein cspA -
Salmonella typhimurium
Length = 70
Score = 33.5 bits (73), Expect = 7.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 249 KVSGTVKWFNVKSGYGFINRND 314
K++G VKWFN G+GFI +D
Sbjct: 4 KMTGIVKWFNADKGFGFITPDD 25
>UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2;
Bacteroidetes/Chlorobi group|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 110
Score = 33.1 bits (72), Expect = 9.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 255 SGTVKWFNVKSGYGFINRND 314
+ TVKWF+ K GYGFI+ D
Sbjct: 3 TSTVKWFDAKKGYGFIHHPD 22
>UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein;
n=13; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Frankia sp. (strain CcI3)
Length = 67
Score = 33.1 bits (72), Expect = 9.8
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 453
DVFVH ++I + +S+ +G++V+F +V G+KG +A V
Sbjct: 26 DVFVHYSSIVADG----YKSLDEGQSVQFEIVQGQKGPQADNV 64
>UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5;
Deinococci|Rep: Cold shock protein homolog - Thermus
thermophilus
Length = 73
Score = 33.1 bits (72), Expect = 9.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 258 GTVKWFNVKSGYGFINR 308
G VKWFN + GYGFI R
Sbjct: 4 GRVKWFNAEKGYGFIER 20
>UniRef50_Q2UH22 Cluster: Alkaline phosphatase; n=1; Aspergillus
oryzae|Rep: Alkaline phosphatase - Aspergillus oryzae
Length = 499
Score = 33.1 bits (72), Expect = 9.8
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +1
Query: 301 STGMTPRXDVF-VHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 477
+TG P+ D V AI R A + D A A AG K + A P G+PV
Sbjct: 54 TTGSNPKIDELPVDDLAIGRVRTHSANNMITDSAASGTAYAAGHKSYNGAISVTPDGQPV 113
Query: 478 KGSPYAADKRRG 513
GS A K G
Sbjct: 114 -GSILEAAKLGG 124
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 701,357,769
Number of Sequences: 1657284
Number of extensions: 12142776
Number of successful extensions: 39220
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 37416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39201
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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