Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P10
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   3.6  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.8  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   6.3  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    26   6.3  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 819 HLHPGHFGAEPDFVLPAPAGIARTHSA 739
           HL+P  FG + + +L AP G  +T+ A
Sbjct: 526 HLYPIAFGTDENILLCAPTGAGKTNVA 552


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 540 KVADEAVKELHAEED*DVVDPRPTKGVHKEMRVKKEALYH 659
           +V D A +  H+E +    DP   KGVH  MR    AL H
Sbjct: 385 EVPDTASETEHSEIEDFHFDPYSEKGVHIAMRYFDAALTH 424


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 697 STAKIATEKTALRWYNASFLTLISLCTPLVG 605
           S +K+  E    RWY+ S+   +++C  ++G
Sbjct: 798 SESKLGLETLFNRWYSESWANYLTICGAVIG 828


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 501 QAPWLPPPIFPSXKVADEAVKELHAEED 584
           +AP LP P+ P+ K+    V   H E+D
Sbjct: 234 KAPELPKPLIPAMKLMSTIVCVKHVEKD 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,693
Number of Sequences: 5004
Number of extensions: 42101
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)