Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_P10
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 43 3e-04
08_01_0202 - 1638978-1639571 41 0.001
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 31 1.6
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 2.9
04_04_1582 - 34590698-34591199,34593849-34594690 29 5.0
03_01_0483 + 3689155-3689814 29 6.6
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 28 8.7
03_05_0145 + 21254448-21255488 28 8.7
>02_01_0158 - 1103461-1104186
Length = 241
Score = 43.2 bits (97), Expect = 3e-04
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVKG 483
D+FVHQ++I + RS+ +GE VEFA+ E G +A VTGP G VKG
Sbjct: 31 DLFVHQSSIKADG----FRSLAEGEQVEFAISESEDGRTKAVDVTGPDGSFVKG 80
Score = 32.7 bits (71), Expect = 0.40
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 243 AEKVSGTVKWFNVKSGYGFINRND 314
A + GTVKWFN G+GFI+ +D
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDD 27
>08_01_0202 - 1638978-1639571
Length = 197
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK-GSPYAA 498
D+FVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG + GS +
Sbjct: 30 DLFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGALTGGSRPSG 85
Query: 499 DKRRGY 516
RGY
Sbjct: 86 GGDRGY 91
Score = 35.9 bits (79), Expect = 0.043
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 243 AEKVSGTVKWFNVKSGYGFINRND 314
+E+V GTVKWF+ G+GFI +D
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDD 26
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 459 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHKHIXP 319
T N ++ FLP G + L + D ++ W ++ + SL HK + P
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHKSMSP 337
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 394 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 483
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 388 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 510
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>03_01_0483 + 3689155-3689814
Length = 219
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 388 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 513
GDG A AG G +AA G G +PV+GS +D RG
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -3
Query: 754 ADALGGPSSIHWARTSPTASTAKIATEKTA 665
A ALG +I W SPT+S+ +I+TE+++
Sbjct: 36 AIALGLSFAIVWTSLSPTSSSQQISTERSS 65
>03_05_0145 + 21254448-21255488
Length = 346
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +3
Query: 513 LPPPIFPSXKVADEAVKELHAEED*DVVDPRPTKGVHKEMRVKKE 647
LPPP+ V +E VKE+ +E V PRP KE+ +KE
Sbjct: 35 LPPPVV----VEEEEVKEVLSETAVPVSRPRPPPEPEKEVVKRKE 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,065,297
Number of Sequences: 37544
Number of extensions: 380604
Number of successful extensions: 1351
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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