Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P10
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...    86   3e-17
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    60   2e-09
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    58   6e-09
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    58   6e-09
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    57   1e-08
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       31   1.5  
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       31   1.5  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 39/60 (65%), Positives = 45/60 (75%)
 Frame = +1

Query: 325 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 504
           D+FVHQTAI  NNP K +RS+GD E V F +V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 45  DIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +3

Query: 237 VIAEKVSGTVKWFNVKSGYGFINRNDT 317
           V A KV GTVKWFNVK+GYGFINR DT
Sbjct: 16  VKATKVKGTVKWFNVKNGYGFINRTDT 42


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +1

Query: 325 DVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 492
           D+FVHQTAIA++   K  +R++GD E V F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 90  DIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 240 IAEKVSGTVKWFNVKSGYGFINRND 314
           I   + G VKW++V   YGFI+RND
Sbjct: 62  ITTGLQGKVKWYSVLRRYGFISRND 86


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
 Frame = +1

Query: 325 DVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 495
           D FVHQTAI +++  K  +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 116 DFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173



 Score = 31.9 bits (69), Expect = 0.64
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 237 VIAEKVSGTVKWFNVKSGYGFINRN 311
           VI   V G VKWF+V+  YGF+ R+
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARD 108


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
 Frame = +1

Query: 325 DVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 495
           D FVHQTAI +++  K  +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 116 DFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173



 Score = 31.9 bits (69), Expect = 0.64
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 237 VIAEKVSGTVKWFNVKSGYGFINRN 311
           VI   V G VKWF+V+  YGF+ R+
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARD 108


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = +1

Query: 325 DVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 492
           DVFVHQTAI++++  K  +R++ D E V F +V G+ G EAA VTGP G  V GS Y
Sbjct: 88  DVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144



 Score = 31.5 bits (68), Expect = 0.84
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 237 VIAEKVSGTVKWFNVKSGYGFINRND 314
           V+   + G VKW++V   YGFI+R+D
Sbjct: 59  VLTAGLQGKVKWYSVLRRYGFISRSD 84


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 258 GTVKWFNVKSGYGFI 302
           G+ KWFNV  GYGF+
Sbjct: 24  GSCKWFNVSKGYGFV 38


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 258 GTVKWFNVKSGYGFI 302
           G+ KWFNV  GYGF+
Sbjct: 55  GSCKWFNVSKGYGFV 69


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 258 GTVKWFNVKSGYGFI 302
           G+ KWFNV  GYGF+
Sbjct: 55  GSCKWFNVSKGYGFV 69


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 258 GTVKWFNVKSGYGFI 302
           G+ KWFNV  GYGF+
Sbjct: 55  GSCKWFNVSKGYGFV 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,562,536
Number of Sequences: 27780
Number of extensions: 273055
Number of successful extensions: 856
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)