Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P10
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.71 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   5.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   5.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   8.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 391 DGEAVEFAVVAGEKGFEAAGVTGPGGEPV 477
           DG+ V    VA E GF+  G   P   P+
Sbjct: 81  DGQQVSITYVADENGFQVQGSHIPTAPPI 109


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 865 LLGLAPCCWFDV 830
           ++G  PCCW+ +
Sbjct: 482 MIGYYPCCWWKI 493


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 865 LLGLAPCCWFDV 830
           ++G  PCCW+ +
Sbjct: 535 MIGYYPCCWWKI 546


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 273 FNVKSGYGFINRNDTKXRCVCASDCHR 353
           F+  SGY  I +  T     C   CH+
Sbjct: 19  FDKCSGYPSIRQGTTSYCLGCGDSCHK 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,763
Number of Sequences: 438
Number of extensions: 3461
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)