Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P08
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   3.7  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    26   6.4  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.5  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 26/97 (26%), Positives = 39/97 (40%)
 Frame = +1

Query: 436 NTVIHRIRGITQERTCEQKASKRPGTVKRPRLLAFFHRLRPPDEHHKNRRSSQRWRNPTG 615
           N ++H++  I   R  + K  ++  T    R +  F R   P    K   SS R    T 
Sbjct: 174 NEILHKV--IIYLRLEDTKEVRQVLTRCYDRYIKPFERDSSPSFKSKRSESSTRKIRNTR 231

Query: 616 L*RYQAFPPGSSLVRSPVPTLPLTGYLSAFLPFGKRG 726
               Q  P   +  +SPV T+ + G  S   P  +RG
Sbjct: 232 SSAQQESPIPETSAQSPVQTIQVNGSTSLKRPLIERG 268


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 499 KRPGTVKRPRLLAFFHRLRPPDEHHKNR--RSSQRWRNPTGL 618
           K+P T  +P  +  F+ L   D  HK+R  R  +R R+ TG+
Sbjct: 97  KKPHTTPKPASIYTFNELVVLDYPHKDRALRYLERLRDDTGI 138


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +1

Query: 565 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 693
           ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,865
Number of Sequences: 5004
Number of extensions: 61653
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)