Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P07
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867...    78   1e-14
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572...    29   5.0  
09_04_0567 + 18585556-18586113                                         28   8.7  

>01_07_0191 +
           41885121-41885909,41886152-41886190,41886701-41886784,
           41887331-41887413,41887501-41887588,41887736-41887990,
           41888275-41888403
          Length = 488

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 38/113 (33%), Positives = 63/113 (55%)
 Frame = +3

Query: 231 STLQDLAVQLFDAGAVRLEDIEAKVGRRTPIYFDLRVIVSHPKLMVAVSHQLEKLIKDVH 410
           + ++ L ++L    AV+      K G  +PIY DLR++V+HP+L+  V+  L  L     
Sbjct: 4   AAMESLILELHAIEAVKFGAFVLKSGITSPIYLDLRMLVAHPRLLSTVASLLGSLPATRP 63

Query: 411 HDMICGVPYAALPLAVVISINTDRPMIMKRKETKLYATKKLLEGVYEKNQTCL 569
           +D++CGVPY ALP+A V+S     PM+++R     +A  + L+G +      L
Sbjct: 64  YDLLCGVPYTALPIASVLSAAASVPMLLRRYHVTPHAAAECLDGSFRAGDAVL 116



 Score = 32.7 bits (71), Expect = 0.40
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +1

Query: 568 LXVEDVVTSGGSXXXXXXXXXXXXXIVTHAVIXLEREPXWR*CTXSEWYCXETLFTLXNL 747
           L VED+VT+G S             +V  AV+ ++RE   R    +      +L TL  +
Sbjct: 116 LIVEDLVTTGSSVLETVAPLREVGLVVADAVVVIDREQGGRENLAANGVALHSLMTLTEV 175

Query: 748 VRMLHKAG 771
           + +L K G
Sbjct: 176 LAVLVKRG 183


>05_05_0334 + 24156532-24156565,24156681-24156782,24157145-24157274,
            24157361-24157445,24157525-24157666,24157762-24157894,
            24157993-24158254,24158331-24158519,24158596-24158721,
            24158809-24159195,24159288-24159398,24159629-24160423,
            24161114-24161255,24161350-24162518,24162609-24162818,
            24163010-24163478,24164037-24164464
          Length = 1637

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 309  RRTPIYFDLRVIVSHPKLMVAVSHQLEKLIKDVHHDMICGVPYAALPLA 455
            R  P Y     I  + K M    H  E+ +KD+  +++CG P    P A
Sbjct: 1067 REKPRYLKSLDIREYMKSMPEEFHNKEQTLKDIKWELLCGFPDWRTPYA 1115


>09_04_0567 + 18585556-18586113
          Length = 185

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 264 DAGAVRLEDIEAKVGRRTPIYFDLRVIVSHPKLMVAVSH 380
           DAG+ R++ + A  GR  P+   LR +V+   +++ V H
Sbjct: 50  DAGSGRIDAVRAIAGRAPPLPLLLRGLVAAADVVLCVEH 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,934,834
Number of Sequences: 37544
Number of extensions: 345443
Number of successful extensions: 779
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)