Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P07
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-11|AAC17032.1|  227|Caenorhabditis elegans Hypothetical...    92   6e-19
Z35641-4|CAA84708.1|  497|Caenorhabditis elegans Hypothetical pr...    83   2e-16
Z29443-13|CAA82579.1|  497|Caenorhabditis elegans Hypothetical p...    83   2e-16
Z68303-3|CAA92638.1|  248|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>AF067219-11|AAC17032.1|  227|Caenorhabditis elegans Hypothetical
           protein R12E2.11 protein.
          Length = 227

 Score = 91.9 bits (218), Expect = 6e-19
 Identities = 48/111 (43%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
 Frame = +3

Query: 243 DLAVQLFDAGAVRLEDIEAKVGRRTPIYFDLRVIVSHPKLM-VAVSHQLEKLI-KDVHHD 416
           D    L+     R  +   K G+ TPIY DLR I+S P+++ +A     EK++  ++  D
Sbjct: 32  DFFENLYQMECFRTGEFYLKSGQMTPIYIDLRRIMSSPRVLRMAAQAMCEKIVASNLKFD 91

Query: 417 MICGVPYAALPLAVVISINTDRPMIMKRKETKLYATKKLLEGVYEKNQTCL 569
            + GVPYAALPLA ++S   + PM+MKRKE K Y TK+L+EGVY+   T L
Sbjct: 92  YVVGVPYAALPLATLVSDILNVPMLMKRKEAKAYGTKQLIEGVYQPGGTVL 142


>Z35641-4|CAA84708.1|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.1 protein.
          Length = 497

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
 Frame = +3

Query: 240 QDLAVQLFDAGAVRLEDIEAKVGRRTPIYFDLRVIVSHPKLMVAVSHQLEKL--IKDVHH 413
           ++L  Q+  A   +  + + K G+ +PIY DLR    HP L++ +S  + K   I +V +
Sbjct: 15  RNLLRQMLKASVFKFGEFQLKSGQISPIYIDLRECFGHPGLLMLISEAISKQVEISEVQY 74

Query: 414 DMICGVPYAALPLAVVISIN-TDRPMIMKRKETKLYATKKLLEGVYEKN 557
             + G+PYAALP A V + N   +P+++ RKE K Y TKKL+EG+Y+ N
Sbjct: 75  AGVLGIPYAALPYASVAAGNYLKKPLLIVRKEAKSYGTKKLIEGLYQPN 123


>Z29443-13|CAA82579.1|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.1 protein.
          Length = 497

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
 Frame = +3

Query: 240 QDLAVQLFDAGAVRLEDIEAKVGRRTPIYFDLRVIVSHPKLMVAVSHQLEKL--IKDVHH 413
           ++L  Q+  A   +  + + K G+ +PIY DLR    HP L++ +S  + K   I +V +
Sbjct: 15  RNLLRQMLKASVFKFGEFQLKSGQISPIYIDLRECFGHPGLLMLISEAISKQVEISEVQY 74

Query: 414 DMICGVPYAALPLAVVISIN-TDRPMIMKRKETKLYATKKLLEGVYEKN 557
             + G+PYAALP A V + N   +P+++ RKE K Y TKKL+EG+Y+ N
Sbjct: 75  AGVLGIPYAALPYASVAAGNYLKKPLLIVRKEAKSYGTKKLIEGLYQPN 123


>Z68303-3|CAA92638.1|  248|Caenorhabditis elegans Hypothetical
           protein ZK809.2 protein.
          Length = 248

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 86  IVTLSV*HQXFVKDK*IQCVLK*SFF*NYKTAHRVTL--DN*CQIKKYH-DVHSTGSC 250
           ++T+S  H+  + D  + C+LK   F  YK  +R TL   N C  K++H  + S G C
Sbjct: 38  LITVSN-HRSNIDDPLMWCILKFREFWRYKDRNRYTLAAHNICFTKQFHTTMFSLGRC 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,493,385
Number of Sequences: 27780
Number of extensions: 312577
Number of successful extensions: 692
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)