Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P07
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    27   0.23 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    27   0.23 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 396 IKDVHHDMICGVPYAALPLAVVISINTDRPMIMKRKETKLYATKKLLEGVYEKNQ 560
           + +VH   +     +A  +A +I I   R    + KE +LYA   L++ V+EK Q
Sbjct: 301 LNEVHTASLRKFILSAFDMARIIQITPKRIQYAQHKENELYA--NLMKIVHEKQQ 353


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 396 IKDVHHDMICGVPYAALPLAVVISINTDRPMIMKRKETKLYATKKLLEGVYEKNQ 560
           + +VH   +     +A  +A +I I   R    + KE +LYA   L++ V+EK Q
Sbjct: 339 LNEVHTASLRKFILSAFDMARIIQITPKRIQYAQHKENELYA--NLMKIVHEKQQ 391


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 351 HPKLMVAVSHQLEKLIKDVHHDMICGVPYAALPLAVVISINTDRPMIMKRK-ETKLYATK 527
           HP+ ++ VS +   LI DV + +   V Y    + V +   T +P  M+R+ +T+++  K
Sbjct: 370 HPETIIDVSRRRSSLICDV-YGVNESVSYERGSMTVSV---TSKPSTMERQTQTEVWIPK 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,742
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)