Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_P06
(889 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117; Eukar... 151 2e-35
UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27; Euka... 138 2e-31
UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=... 124 2e-27
UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal ... 118 2e-25
UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole gen... 108 2e-22
UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillar... 107 3e-22
UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17; ... 91 3e-17
UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13 prot... 90 8e-17
UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19; ... 87 6e-16
UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2; A... 80 6e-14
UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=... 77 8e-13
UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7; A... 77 8e-13
UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1; Encepha... 74 4e-12
UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1; Cenar... 72 2e-11
UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1; Can... 69 2e-10
UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 - R... 61 4e-08
UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultu... 58 3e-07
UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4; T... 58 3e-07
UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6; H... 51 3e-05
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.002
UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7; E... 35 2.4
UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic D-r... 33 7.4
UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisia... 33 9.7
>UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117;
Eukaryota|Rep: 40S ribosomal protein S13 - Homo sapiens
(Human)
Length = 151
Score = 151 bits (366), Expect = 2e-35
Identities = 70/78 (89%), Positives = 76/78 (97%)
Frame = +3
Query: 327 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 506
I+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYKTK
Sbjct: 74 ILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKR 133
Query: 507 VLPPNWKYESSTASALVA 560
VLPPNWKYESSTASALVA
Sbjct: 134 VLPPNWKYESSTASALVA 151
Score = 138 bits (333), Expect = 2e-31
Identities = 65/73 (89%), Positives = 67/73 (91%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGV 286
MGR HAPG GLSQSALPYRRSVPTWLKLT+DDVK QIYKL K GLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 287 AQVRFVTGKKILR 325
AQVRFVTG KILR
Sbjct: 61 AQVRFVTGNKILR 73
>UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27;
Eukaryota|Rep: 40S ribosomal protein S13-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 151
Score = 138 bits (334), Expect = 2e-31
Identities = 67/92 (72%), Positives = 76/92 (82%)
Frame = +3
Query: 285 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 464
+P+ S + I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVE
Sbjct: 60 IPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVE 119
Query: 465 SRIHRLARYYKTKSVLPPNWKYESSTASALVA 560
SRIHRLARYYK LPP WKYES+TAS LVA
Sbjct: 120 SRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
Score = 103 bits (246), Expect = 8e-21
Identities = 48/73 (65%), Positives = 55/73 (75%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGV 286
MGR H+ G G+S SALPY+RS P+WLK T DV I K K GLTPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 287 AQVRFVTGKKILR 325
QV+ VTG KILR
Sbjct: 61 PQVKSVTGSKILR 73
>UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=39;
Eukaryota|Rep: 40S ribosomal protein S13, putative -
Leishmania major
Length = 151
Score = 124 bits (300), Expect = 2e-27
Identities = 56/78 (71%), Positives = 67/78 (85%)
Frame = +3
Query: 327 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 506
I+K GLAP++PEDLY+L+K+A MRKHLER+ D+D+K+RLILVESRIHRLARYYK
Sbjct: 74 ILKHNGLAPEIPEDLYFLVKRATQMRKHLERHTTDRDTKYRLILVESRIHRLARYYKRVK 133
Query: 507 VLPPNWKYESSTASALVA 560
LPP WKYESSTASA+VA
Sbjct: 134 QLPPTWKYESSTASAMVA 151
Score = 83.4 bits (197), Expect = 7e-15
Identities = 39/73 (53%), Positives = 51/73 (69%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGV 286
M R H G G + SALPYRR+ P WLK+ + +V + K + G+ PSQIG+ LRDS G+
Sbjct: 1 MVRMHGNGRGKASSALPYRRTPPAWLKIASRNVVKMVCKSSRKGMMPSQIGMELRDSMGI 60
Query: 287 AQVRFVTGKKILR 325
AQV+ VTG+KILR
Sbjct: 61 AQVKNVTGRKILR 73
>UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal
protein S13; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S13 - Rattus norvegicus
Length = 131
Score = 118 bits (284), Expect = 2e-25
Identities = 57/73 (78%), Positives = 64/73 (87%)
Frame = +3
Query: 342 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPN 521
GLA DLP DLY+LIKKAVA++KHLERNRKDKD+KF L L ESRIH LARY KTK +LPP+
Sbjct: 59 GLALDLPGDLYHLIKKAVAVQKHLERNRKDKDAKFCLSLTESRIHPLARYCKTKRMLPPS 118
Query: 522 WKYESSTASALVA 560
WKYES +ASALVA
Sbjct: 119 WKYESPSASALVA 131
Score = 89.8 bits (213), Expect = 8e-17
Identities = 42/61 (68%), Positives = 46/61 (75%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGV 286
MG HAP LSQS LPY SV WLK T+DD+K QIYKL K GLTPSQIGV LRD+HG+
Sbjct: 1 MGAMHAPRKALSQSVLPYHHSVLMWLKSTSDDMKEQIYKLAKKGLTPSQIGVTLRDTHGL 60
Query: 287 A 289
A
Sbjct: 61 A 61
>UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_187, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 129
Score = 108 bits (260), Expect = 2e-22
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = +3
Query: 345 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 524
L P++PEDLY+LIKKAVA+RKHLER+RKDKDSKFRLI+VESRIHRLARYYK LPP W
Sbjct: 69 LGPEIPEDLYHLIKKAVAIRKHLERSRKDKDSKFRLIVVESRIHRLARYYKRTKKLPPVW 128
Query: 525 K 527
K
Sbjct: 129 K 129
>UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillardia
theta|Rep: 40S ribosomal protein S13 - Guillardia theta
(Cryptomonas phi)
Length = 147
Score = 107 bits (258), Expect = 3e-22
Identities = 46/71 (64%), Positives = 61/71 (85%)
Frame = +3
Query: 327 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 506
I+K GL P++PEDL++LIKKA+ ++KHLERN+KDKDSKFRLIL ES+IHRL+RYYK
Sbjct: 71 ILKKNGLNPEIPEDLFFLIKKAINIKKHLERNKKDKDSKFRLILTESKIHRLSRYYKRIQ 130
Query: 507 VLPPNWKYESS 539
+P NW+++SS
Sbjct: 131 RIPINWRFDSS 141
Score = 58.8 bits (136), Expect = 2e-07
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +2
Query: 134 GLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGVAQVRFVTGK 313
G++ S +P+ R+ P W+K + + + I L K GL PSQIG LRDS G+ V+ + G+
Sbjct: 7 GIASSLIPFERNAPLWVKDSKEKINEIICNLAKKGLVPSQIGSYLRDSAGIPLVKNIAGR 66
Query: 314 KILR 325
I++
Sbjct: 67 NIVK 70
>UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17;
Euryarchaeota|Rep: 30S ribosomal protein S15P/S13e -
Methanococcus jannaschii
Length = 153
Score = 91.1 bits (216), Expect = 3e-17
Identities = 44/82 (53%), Positives = 58/82 (70%)
Frame = +3
Query: 312 KRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 491
K+ S IMK GL P +PEDL L+++AV +RKHLE++ KD SK L L+ES+I RL +Y
Sbjct: 69 KKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIESKIRRLVKY 128
Query: 492 YKTKSVLPPNWKYESSTASALV 557
YK+K VLP +W+Y TA LV
Sbjct: 129 YKSKGVLPADWRYTPETARLLV 150
Score = 67.7 bits (158), Expect = 4e-10
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGV 286
M R HA G S S P R+ VP W++ T + V+ + +L K G +QIG++LRD++G+
Sbjct: 1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGI 60
Query: 287 AQVRFVTGKKI 319
V+ +TGKKI
Sbjct: 61 PDVKLITGKKI 71
>UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13
protein; n=2; Pan troglodytes|Rep: PREDICTED: similar to
Rps13 protein - Pan troglodytes
Length = 269
Score = 89.8 bits (213), Expect = 8e-17
Identities = 43/59 (72%), Positives = 47/59 (79%)
Frame = +2
Query: 98 AANMGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRD 274
AA GR H PG GLS+SAL Y SVPTWLKLT+D+VK QIYKL K GLTP QIGV+LRD
Sbjct: 211 AAITGRIHVPGKGLSRSALLYHHSVPTWLKLTSDNVKEQIYKLTKKGLTPPQIGVILRD 269
>UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Pyrococcus abyssi
Length = 158
Score = 87.0 bits (206), Expect = 6e-16
Identities = 40/77 (51%), Positives = 55/77 (71%)
Frame = +3
Query: 327 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 506
I++ GLAP++PEDL +LIK+AV +RKHLE++ KD S L L+ES+I RL +YYK K
Sbjct: 81 ILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKG 140
Query: 507 VLPPNWKYESSTASALV 557
LP +W+Y+ A LV
Sbjct: 141 KLPKDWRYDPEQAKLLV 157
Score = 54.4 bits (125), Expect = 4e-06
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGV 286
M R HA G S S P R + P WL+ T +D++ + KL K G + + IG +LRD +G+
Sbjct: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
Query: 287 AQVR 298
V+
Sbjct: 61 PTVK 64
>UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Nanoarchaeum equitans
Length = 154
Score = 80.2 bits (189), Expect = 6e-14
Identities = 36/80 (45%), Positives = 50/80 (62%)
Frame = +3
Query: 306 LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 485
+ K ++ GL PD+P DL YL+K+A + KH+E N +D +K L+ S+IHRLA
Sbjct: 69 IGKSLQDFLEEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLA 128
Query: 486 RYYKTKSVLPPNWKYESSTA 545
+YYK K VLP +WKY A
Sbjct: 129 KYYKRKGVLPKDWKYSIEIA 148
Score = 52.0 bits (119), Expect = 2e-05
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +2
Query: 107 MGRXHAPGX--GLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSH 280
M R HA G S S P R + P W + V+ +I +L K G +P+ IG++LRD +
Sbjct: 1 MSRLHAHKRYHGQSGSKRPLRTTKPEWAPYDKEFVENKIIELAKQGYSPAMIGLILRDQY 60
Query: 281 GVAQVRFVTGKKILRYHE 334
G+ VR GK + + E
Sbjct: 61 GIPDVRLYIGKSLQDFLE 78
>UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=1;
Bigelowiella natans|Rep: Small subunit ribosomal protein
S13 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 183
Score = 76.6 bits (180), Expect = 8e-13
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +3
Query: 321 SXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKT 500
S I++ GL P +PEDL+YLIKKA ++ HL + D +++ L L+ES I+RL+RYYK
Sbjct: 73 SKILRLKGLVPLVPEDLFYLIKKANKIKAHLSDFKHDLANRYHLNLIESHIYRLSRYYKR 132
Query: 501 KSVLPPNWKYESS 539
LP NWKY S+
Sbjct: 133 IFRLPKNWKYISN 145
Score = 49.6 bits (113), Expect = 1e-04
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGK-XGLTPSQIGVMLRDSHG 283
MG+ ++ G G+S + +PYR+ W LT+ ++ I L K L PS+IG++LRD
Sbjct: 1 MGKMYSKGKGISSTTVPYRKYSCEWKGLTSQNLIKIIANLAKNNNLPPSKIGLVLRDEKL 60
Query: 284 VAQVRFVTGKKI 319
V R ++G I
Sbjct: 61 VVDTRNISGMNI 72
>UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Archaeoglobus fulgidus
Length = 152
Score = 76.6 bits (180), Expect = 8e-13
Identities = 37/73 (50%), Positives = 50/73 (68%)
Frame = +3
Query: 312 KRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 491
K+ I+K G+ PEDL LIKKA+ +R HLE +RKDK ++ L L+E++I RL+ Y
Sbjct: 69 KKIQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRRGLQLIEAKIWRLSSY 128
Query: 492 YKTKSVLPPNWKY 530
YK K VLP +WKY
Sbjct: 129 YKEKGVLPADWKY 141
Score = 62.9 bits (146), Expect = 1e-08
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGV 286
M R HA G S S YR S P W+ ++ ++V+ ++ +L G PS IG++LRD +G+
Sbjct: 1 MARIHARRRGKSGSKRIYRDSPPEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYGI 60
Query: 287 AQVRFVTGKKI 319
V+ VTGKKI
Sbjct: 61 PSVKQVTGKKI 71
>UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S13
- Encephalitozoon cuniculi
Length = 148
Score = 74.1 bits (174), Expect = 4e-12
Identities = 33/74 (44%), Positives = 48/74 (64%)
Frame = +3
Query: 306 LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 485
L + + ++ G+ P +P DL L+ +A +R HL RKD +K+RLILV SR++R+A
Sbjct: 67 LGESITRFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSSRMYRVA 126
Query: 486 RYYKTKSVLPPNWK 527
RYYK K +P NWK
Sbjct: 127 RYYKRKMRIPGNWK 140
Score = 62.9 bits (146), Expect = 1e-08
Identities = 26/74 (35%), Positives = 41/74 (55%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGV 286
M + H+ G G S S PY + PTWL + D++K + ++G G+ IG LRD +G+
Sbjct: 1 MAKMHSSGKGRSGSVKPYATAFPTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGI 60
Query: 287 AQVRFVTGKKILRY 328
+ V G+ I R+
Sbjct: 61 GKASDVLGESITRF 74
>UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein S15P/S13E -
Cenarchaeum symbiosum
Length = 148
Score = 72.1 bits (169), Expect = 2e-11
Identities = 32/78 (41%), Positives = 51/78 (65%)
Frame = +3
Query: 312 KRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 491
K + IM+ G P+LPEDL +++KAV +++HL N+ D+ + L L+E+++HRL Y
Sbjct: 68 KSVTQIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIEAKVHRLDVY 127
Query: 492 YKTKSVLPPNWKYESSTA 545
YK +P +WKY+S A
Sbjct: 128 YKRIGRIPKDWKYKSVVA 145
Score = 57.6 bits (133), Expect = 4e-07
Identities = 30/76 (39%), Positives = 40/76 (52%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGV 286
MGR H+ G S S P P+W++ +V+ I K K GL PSQIG LRD H +
Sbjct: 1 MGRLHSHRHGKSHSIRPSSPKAPSWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAI 59
Query: 287 AQVRFVTGKKILRYHE 334
R +TGK + + E
Sbjct: 60 PLTRPITGKSVTQIME 75
>UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal
S13S15-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 149
Score = 68.5 bits (160), Expect = 2e-10
Identities = 30/78 (38%), Positives = 50/78 (64%)
Frame = +3
Query: 312 KRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 491
K I++ L ++PEDL ++KKAV +++HL+ N+ D+ + L L+E+++HRL+ Y
Sbjct: 69 KTIGEILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIEAKVHRLSVY 128
Query: 492 YKTKSVLPPNWKYESSTA 545
YK +P WKY+S A
Sbjct: 129 YKKIGRIPATWKYKSVVA 146
Score = 59.7 bits (138), Expect = 1e-07
Identities = 27/71 (38%), Positives = 39/71 (54%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGV 286
MGR H G S S P P+W+ + +++ + K K GLTPSQIG+ LRD H +
Sbjct: 1 MGRMHTHRHGKSHSIRPATLRAPSWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSI 60
Query: 287 AQVRFVTGKKI 319
++ +T K I
Sbjct: 61 PLIKPITKKTI 71
>UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 -
Rattus norvegicus (Rat)
Length = 481
Score = 60.9 bits (141), Expect = 4e-08
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = +2
Query: 98 AANMGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVK 208
+A +GR HAPG GLSQSALPYRRSV WLKL +DDVK
Sbjct: 441 SAIVGRMHAPGKGLSQSALPYRRSVLMWLKLMSDDVK 477
>UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultured
marine group II euryarchaeote 37F11|Rep: 30S ribosomal
protein S15 - uncultured marine group II euryarchaeote
37F11
Length = 151
Score = 58.0 bits (134), Expect = 3e-07
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +3
Query: 306 LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 485
L KR ++ + PEDL L+++AVA+ +HL N +D +K L L E++I RL
Sbjct: 67 LGKRIGAVLSENDESGTYPEDLMNLMRQAVAIIEHLTTNSRDLHNKRSLELTEAKIRRLG 126
Query: 486 RYYKTKSVLPPNWKYESSTASALV 557
YYK + L +W+Y+ +V
Sbjct: 127 NYYKAEGRLDSDWRYKRDQLRLIV 150
Score = 56.4 bits (130), Expect = 9e-07
Identities = 27/71 (38%), Positives = 39/71 (54%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGV 286
M R +A G S S+ P+ P W A +++ I + K G++ +QIG +LRD H V
Sbjct: 1 MARMYASKRGKSGSSKPFMTEAPEWSNKDAKEIESLILQYFKDGMSTAQIGTILRDKHAV 60
Query: 287 AQVRFVTGKKI 319
VR V GK+I
Sbjct: 61 PNVRLVLGKRI 71
>UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S15P/S13e -
Picrophilus torridus
Length = 146
Score = 58.0 bits (134), Expect = 3e-07
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = +3
Query: 327 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 506
++K L D+PEDL LI++ KHL N+ D ++K + L+ S++ RL RYYK S
Sbjct: 74 VLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMSKMLRLIRYYKRTS 133
Query: 507 VLPPNWKYE 533
LP +W E
Sbjct: 134 RLPQDWSLE 142
Score = 49.6 bits (113), Expect = 1e-04
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGV 286
M R H G S S R P+W++ + D++K I K+ K G+T S IG+ LRD + +
Sbjct: 1 MARMHTRKRGRSGSKRIEVRERPSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAI 60
Query: 287 AQVRFVTGKKI 319
R V K+
Sbjct: 61 PGTRPVLHMKL 71
>UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S15P/S13e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 156
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/78 (35%), Positives = 43/78 (55%)
Frame = +3
Query: 312 KRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 491
K+ + I++ PDLPEDL L+++AV +R H++ N D +K L +S+I RL Y
Sbjct: 73 KKVTEILEENEAEPDLPEDLRNLLERAVRLRDHMDENPGDYQNKRALQNTQSKIRRLIDY 132
Query: 492 YKTKSVLPPNWKYESSTA 545
Y+ V N+ Y A
Sbjct: 133 YRGDEV-DENFTYSYDNA 149
Score = 44.0 bits (99), Expect = 0.005
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +2
Query: 107 MGRXHAPGXGLSQSALPYRRSVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDS--H 280
M R H G S S P P W + D ++ ++ +L + G +PS+IG+ LRD
Sbjct: 1 MARMHTRRRGSSDSDKPAADEPPEWSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQ 60
Query: 281 G--VAQVRFVTGKKI 319
G + V TGKK+
Sbjct: 61 GTPIPDVSLATGKKV 75
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 669 DPDMIRYIDEFGQTTTRMQ 725
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7;
Eurotiomycetidae|Rep: Ribosomal protein S15, putative -
Aspergillus clavatus
Length = 306
Score = 35.1 bits (77), Expect = 2.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 378 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 530
L K + + +HL+ KDK +K L L+ + +L RY + K P W++
Sbjct: 238 LTAKIINLSRHLQSTNKDKHNKRNLRLLVHKRQKLLRYLRKKERGGPRWQH 288
>UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic
D-ribose-binding protein; n=4; Rhizobiales|Rep: Ribose
ABC transporter, periplasmic D-ribose-binding protein -
Brucella suis
Length = 355
Score = 33.5 bits (73), Expect = 7.4
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 167 SVPTWLKLTADDVKXQIYKLGKXGLTPSQIGVMLRDSHGVAQVR 298
+VPTW+K T D + ++ +L K GL +M+ D+ G AQ +
Sbjct: 57 AVPTWMKQTEDTIVDEVAQLKKEGLVKD---LMITDAQGNAQTQ 97
>UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisiae
MRPS28: YDR337w. precursor; n=1; Aspergillus niger|Rep:
Remark: alternate name for S. cerevisiae MRPS28:
YDR337w. precursor - Aspergillus niger
Length = 280
Score = 33.1 bits (72), Expect = 9.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 378 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 527
L K + + +HL+ +KD+ +K L L+ + +L RY + K P W+
Sbjct: 212 LTAKIMNLSRHLQTTKKDRHNKRNLRLLVHKRQKLLRYLRRKERGGPRWQ 261
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,889,073
Number of Sequences: 1657284
Number of extensions: 11398717
Number of successful extensions: 25886
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 25212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25881
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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