Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_P05
(881 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 182 1e-44
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 78 3e-13
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 73 7e-12
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 71 3e-11
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 66 1e-09
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 61 4e-08
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 56 2e-06
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 54 4e-06
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.002
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 44 0.005
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 42 0.016
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 41 0.036
UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11; ... 40 0.084
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.084
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2... 37 0.78
UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4; ... 35 3.2
UniRef50_Q59E55 Cluster: CG33545-PA; n=4; Diptera|Rep: CG33545-P... 35 3.2
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.5
UniRef50_Q2SKV3 Cluster: Transcriptional regulator containing a ... 33 7.3
UniRef50_Q7S8W8 Cluster: Predicted protein; n=1; Neurospora cras... 33 7.3
UniRef50_A4Q8I4 Cluster: MobA protein; n=1; Listonella anguillar... 33 9.6
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 182 bits (443), Expect = 1e-44
Identities = 81/81 (100%), Positives = 81/81 (100%)
Frame = +1
Query: 553 TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAH 732
TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAH
Sbjct: 24 TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAH 83
Query: 733 AVGISVRCRSFAPSWAVCTNP 795
AVGISVRCRSFAPSWAVCTNP
Sbjct: 84 AVGISVRCRSFAPSWAVCTNP 104
Score = 41.5 bits (93), Expect = 0.027
Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Frame = +3
Query: 486 SKRPGTVKRPRCWRFSIGSAPLNEHHK---NRRSSQRWRNPTGL*RYQAFPPGSSLVRSP 656
SK+ T R RFSIGSAPL K R + ++ R+ P +L+ P
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 657 --VP-TLPLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPPFSPTAAPYPV 827
+P T P A+ + A+ S RCR + V C + PPFSPTAAPYPV
Sbjct: 62 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAV-----CTN-PPFSPTAAPYPV 115
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 77.8 bits (183), Expect = 3e-13
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +3
Query: 645 VRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 755
+RSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV
Sbjct: 1 MRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 37
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 73.3 bits (172), Expect = 7e-12
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +1
Query: 553 TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 666
TSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF P
Sbjct: 60 TSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 71.3 bits (167), Expect = 3e-11
Identities = 33/42 (78%), Positives = 34/42 (80%)
Frame = +1
Query: 553 TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 678
TSI K DAQ+ GGETRQDYKD RRFPL APSCALLF P LP
Sbjct: 92 TSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133
Score = 52.8 bits (121), Expect = 1e-05
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 317 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLT 415
R +C G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 66.1 bits (154), Expect = 1e-09
Identities = 32/56 (57%), Positives = 40/56 (71%)
Frame = -3
Query: 795 GVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQESARGSFQG 628
GVRA+SPAWSERP P+ DT SVSYEKAPRFPKG++ + +G Q R + +G
Sbjct: 27 GVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQV---SGKRQGRNRRAHEG 79
Score = 48.8 bits (111), Expect = 2e-04
Identities = 25/40 (62%), Positives = 27/40 (67%)
Frame = -1
Query: 698 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT 579
+K QVSGKRQGRNRRAHEGA+ K SL PPLT
Sbjct: 60 KKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 60.9 bits (141), Expect = 4e-08
Identities = 37/57 (64%), Positives = 38/57 (66%)
Frame = -2
Query: 550 RGAEPMEKRQQRGLFTVPGLLLAFCSHVLSCVIXLILWITVLPPLSELIPLAAAERP 380
RGAEPMEKR + L V LL CS L LILWITVLPPLSEL PLAA ERP
Sbjct: 4 RGAEPMEKRLRCWLLPVLCFLLT-CSFRL---YPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 55.6 bits (128), Expect = 2e-06
Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +2
Query: 293 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQG 451
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 54.4 bits (125), Expect = 4e-06
Identities = 32/72 (44%), Positives = 34/72 (47%)
Frame = +1
Query: 580 VRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCR 759
VR GETRQD K P P PPFSL + + GIS RCR
Sbjct: 23 VRSGETRQDLKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCR 82
Query: 760 SFAPSWAVCTNP 795
SFAPSWAV NP
Sbjct: 83 SFAPSWAVSKNP 94
Score = 40.7 bits (91), Expect = 0.048
Identities = 22/45 (48%), Positives = 24/45 (53%)
Frame = +3
Query: 693 FLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPPFSPTAAPYPV 827
F +GSVALSHSS + PPFSPTAAPYPV
Sbjct: 61 FSLAGSVALSHSSHSGISARCRSFAPSWAVSKNPPFSPTAAPYPV 105
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 95 DPDMIRYIDEFGQTTTRMQ 151
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 44.0 bits (99), Expect = 0.005
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +3
Query: 219 INKLTTTIAFILCFRFRVEVWEVFSALMNRPTRGERRFAYW 341
+++LT L RF V V +ALMNRPTRGERRFAYW
Sbjct: 1 MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 42.3 bits (95), Expect = 0.016
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +1
Query: 517 VAGVFXXXXXXXTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 666
++ +F T+ITKI Q + +T+ +YK T FPL++PS +LLF P
Sbjct: 65 LSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 41.1 bits (92), Expect = 0.036
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3
Query: 795 GVRAHSPAWSERPTPN 748
GVRAHSPAWSERPTPN
Sbjct: 27 GVRAHSPAWSERPTPN 42
>UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11;
cellular organisms|Rep: Uncharacterized 9.4 kDa protein
- Escherichia coli
Length = 84
Score = 39.9 bits (89), Expect = 0.084
Identities = 19/26 (73%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +2
Query: 794 PVQPDRCALSGTIVL-SQPGKHDLSP 868
PVQPDRCALSG L S P +HDLSP
Sbjct: 5 PVQPDRCALSGNYRLESNPVRHDLSP 30
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.084
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 363 ERGSGRAPNTQTASPRALADSLMQ 292
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
cellular organisms|Rep: Putative uncharacterized protein
1 - Escherichia coli
Length = 47
Score = 36.7 bits (81), Expect = 0.78
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 795 GVRAHSPAWSERPTPN*DT 739
GV A+SPAWSERPTP+ DT
Sbjct: 27 GVLAYSPAWSERPTPSRDT 45
>UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 668)
Length = 755
Score = 34.7 bits (76), Expect = 3.2
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -1
Query: 725 MRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 621
+R+R A RR GG+ G+R+GRNR+ + RG+R
Sbjct: 355 VRRRAAPRRRHGGEWRGRRRGRNRKRRQ--QRGQR 387
>UniRef50_Q59E55 Cluster: CG33545-PA; n=4; Diptera|Rep: CG33545-PA -
Drosophila melanogaster (Fruit fly)
Length = 660
Score = 34.7 bits (76), Expect = 3.2
Identities = 30/83 (36%), Positives = 42/83 (50%)
Frame = +3
Query: 627 PPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPPFSP 806
P GSS + SPVP PL SA +P+ +V L+ C SV L V PP
Sbjct: 263 PSGSSFMPSPVPPAPLPA--SASVPAPTVPLATQISCPSAPSV-----PLPLV-LPPNPL 314
Query: 807 TAAPYPVLSS*VNPVNTTYRPGS 875
T++P+P +S + P NT ++ S
Sbjct: 315 TSSPHPSANSNL-PANTAHQVSS 336
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 5.5
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -2
Query: 253 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 89
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
>UniRef50_Q2SKV3 Cluster: Transcriptional regulator containing a
DNA-binding HTH domain and an aminotransferase domain
(MocR family) and their eukaryotic orthologs; n=1;
Hahella chejuensis KCTC 2396|Rep: Transcriptional
regulator containing a DNA-binding HTH domain and an
aminotransferase domain (MocR family) and their
eukaryotic orthologs - Hahella chejuensis (strain KCTC
2396)
Length = 498
Score = 33.5 bits (73), Expect = 7.3
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 725 MRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*ASIFVMLVQG 546
MRKR+A R++ R+G EG + G LV S PL+ S F+ VQ
Sbjct: 395 MRKRYAMRQQTLATALQPREGDVEILVEGDNAGLHLV---CWMPSLPLSAVSTFIEQVQT 451
Query: 545 GGAYGKTPATRPFY-GSWPFAGLLL 474
G + PFY G P AGLLL
Sbjct: 452 QGV--RVYPIHPFYHGEPPAAGLLL 474
>UniRef50_Q7S8W8 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 411
Score = 33.5 bits (73), Expect = 7.3
Identities = 26/85 (30%), Positives = 41/85 (48%)
Frame = +3
Query: 576 SSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 755
S +R+R+P+ + R + P + P+P P T +S P+ S + S SS R S
Sbjct: 222 SPRRYRSPSPILR-RGIPSPLDITNFPLPPPPST--ISPVFPTSSSS-SSSSSSRSSSPT 277
Query: 756 *VVRSKLGCVHEPPFSPTAAPYPVL 830
+ + C EPP SP A P++
Sbjct: 278 QSPQHENQCDPEPPQSPQATSPPII 302
>UniRef50_A4Q8I4 Cluster: MobA protein; n=1; Listonella anguillarum
serovar O2|Rep: MobA protein - Listonella anguillarum
serovar O2
Length = 548
Score = 33.1 bits (72), Expect = 9.6
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 208 NGYK*SNSITNFTNKAFFSLHSSCG-LSKLINVSYHVWIQLTLXKGRSAAAVPTI 47
NG+K N + + L++ CG L +L+ + + + LT+ +GR A P++
Sbjct: 488 NGFKAGNGVERAVTNDYDELNAKCGHLDRLLRETDPIGLTLTMEQGRKADPTPSV 542
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 852,385,441
Number of Sequences: 1657284
Number of extensions: 17780503
Number of successful extensions: 51857
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 48701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51805
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79112361923
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -