Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P05
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365...    31   0.93 
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   2.8  
08_01_0156 - 1233431-1233925                                           29   6.5  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.6  
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    28   8.6  
06_03_0218 + 18219956-18220555                                         28   8.6  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.6  
03_04_0061 - 16949038-16950006                                         28   8.6  

>05_01_0462 -
           3658153-3658290,3658394-3658540,3658622-3658720,
           3658802-3659253,3659597-3660280,3662072-3662180
          Length = 542

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
 Frame = +3

Query: 630 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKLGCV-HEP-- 794
           P S+ + +PVPTLP++   + F   G    S H +  R Y        S  G V HEP  
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341

Query: 795 PFSPTAAP-YPVLSS 836
           P  P AAP YP  +S
Sbjct: 342 PSYPPAAPSYPPATS 356


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 635 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 516
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>08_01_0156 - 1233431-1233925
          Length = 164

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -1

Query: 773 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 600
           LG  D   TE+  A A     A+R E+  GG   G R G   RA +   +G     +   
Sbjct: 89  LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148

Query: 599 RVSPPLT 579
           R SP ++
Sbjct: 149 RASPTVS 155


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 299 NESAN---ARGEAVCVLGALPLPRSLTRCAR 382
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 792  PPFSPTAAPYPVLSS*VNPVNTTYRPGSXT 881
            P +SPT+  Y   S   +P + +Y PGS T
Sbjct: 1562 PGYSPTSPSYSPASPSYSPTSPSYTPGSPT 1591


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 707 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 612
           +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 728 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 627
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 602 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 718
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,087,437
Number of Sequences: 37544
Number of extensions: 538678
Number of successful extensions: 1806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1804
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)