Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P05
         (881 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        32   3.2  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        32   3.2  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       32   3.2  
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest...    31   4.2  
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest...    31   4.2  
AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.           31   4.2  

>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 698 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 570
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 698 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 570
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 698 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 570
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +3

Query: 624  FPPGSSLVRSPVPTLPLT-GYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPP- 797
            F PG S   SP P  P + G  S ++PS   A+S S      S     RS  G   + P 
Sbjct: 1557 FSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPT--SPAYEPRSPGGYTPQSPS 1614

Query: 798  FSPTAAPYPVLSS*VNPVNTTYRPGS 875
            +SPT+  Y   S   +P +  Y P S
Sbjct: 1615 YSPTSPSYSPTSPSYSPTSPNYSPTS 1640


>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +3

Query: 624  FPPGSSLVRSPVPTLPLT-GYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPP- 797
            F PG S   SP P  P + G  S ++PS   A+S S      S     RS  G   + P 
Sbjct: 1557 FSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPT--SPAYEPRSPGGYTPQSPS 1614

Query: 798  FSPTAAPYPVLSS*VNPVNTTYRPGS 875
            +SPT+  Y   S   +P +  Y P S
Sbjct: 1615 YSPTSPSYSPTSPSYSPTSPNYSPTS 1640


>AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.
          Length = 326

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 642 LVRSPVPTLPLTGYLSAFLPSGSVALSHS 728
           + R PV T+P+   L AF   GSV LSHS
Sbjct: 161 IFRGPVATIPIVLLLKAFPYCGSVVLSHS 189


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,273,438
Number of Sequences: 237096
Number of extensions: 2840819
Number of successful extensions: 12641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12640
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)