Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P03
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    32   0.69 
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    31   1.6  
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376...    29   4.9  
07_01_0126 - 947072-948687,949454-949627,950117-951572                 28   8.5  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    28   8.5  

>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
            2668344-2668410,2668473-2668562,2668672-2668787,
            2668999-2671924
          Length = 1170

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 630  IFINGCGRISFLSDTVRDLINLRNIEIRNVQ--HVIINERALAWLPFPRENEMNXVS 794
            +F+NGC ++  L + +  + NLR I I      H I N  ++ WL       +  +S
Sbjct: 863  LFLNGCPKLRALPEDLHRIANLRRIHIEGAHTLHEIDNLPSVLWLKVKNNRCLRRIS 919


>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
            18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 570  DSEVTLRPDGPYRVPSTITAIFINGCGRISFLSDTVRDLINLRNIEI 710
            DS V     G +    T+T + I GC   S L  ++R L NL+++E+
Sbjct: 1101 DSNVLEGLPGGFGCQGTLTTLVILGCPSFSSLPASIRCLSNLKSLEL 1147


>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
            18238033-18238041,18238096-18238248
          Length = 1465

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 597  GPYRVPSTITAIFINGCGRISFLSDTVRDLINLRNIEI 710
            G +    T+T + I GC   S L  ++R L NL+++E+
Sbjct: 1110 GGFGCQDTLTTLVILGCPSFSSLPASIRCLSNLKSLEL 1147


>07_01_0126 - 947072-948687,949454-949627,950117-951572
          Length = 1081

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 649  DEYHSCRIPSEILSIYVTSRSEMFNTLSSMRE-LWRGCRFRGKMK 780
            DEYH+C + + +L     +RSE    + SM++ L+   R +GK K
Sbjct: 999  DEYHTCSVQNMVLCRTNFTRSEAEVPMLSMQDFLFGSVRPQGKFK 1043


>03_01_0300 +
           2350232-2352274,2352349-2352669,2352752-2352838,
           2353031-2353708,2353800-2353964,2354139-2354433,
           2354581-2354795,2354885-2355190,2355269-2355332,
           2355426-2355665,2355783-2355886
          Length = 1505

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 447 WWQIIFVLNTSLAQSNTVTVCQEDDCSCDSFTRLICNCTSA 569
           WW + FVL   +A  +T  +  +DD     +  ++ N  SA
Sbjct: 138 WWVVSFVLCVGIAYDDTRHLMGDDDDDEVDYAHMVANFASA 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,962,076
Number of Sequences: 37544
Number of extensions: 452477
Number of successful extensions: 935
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)