Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P02
         (970 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    153   2e-37
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   153   2e-37

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  153 bits (371), Expect = 2e-37
 Identities = 72/113 (63%), Positives = 88/113 (77%)
 Frame = +1

Query: 313 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 492
           +N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S
Sbjct: 77  QNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRS 136

Query: 493 PKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 651
            K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 137 EKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189



 Score = 68.1 bits (159), Expect = 1e-11
 Identities = 30/63 (47%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
 Frame = +3

Query: 129 GLTVHVQSRLVPVKGPRGVLKRXFKHLAVDIRMV-NPRLLKVEXWFGSKKELAAVRTVCS 305
           G+TV V +++V V+GPRG L R FKHL +D +++   R L+V+ WFG+++ +AA+RT  S
Sbjct: 15  GVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAIS 74

Query: 306 HVE 314
           HV+
Sbjct: 75  HVQ 77


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  153 bits (371), Expect = 2e-37
 Identities = 72/113 (63%), Positives = 88/113 (77%)
 Frame = +1

Query: 313 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 492
           +N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S
Sbjct: 70  QNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRS 129

Query: 493 PKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 651
            K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 130 EKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 182



 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 31/65 (47%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
 Frame = +3

Query: 129 GLTVHVQSRLVPVKGPRGVLKRXFKHLAVDIRMV---NPRLLKVEXWFGSKKELAAVRTV 299
           G+TVHV +++V V+GPRG L R FKHL +D +++     R L+V+ WFG+++ +AA+RT 
Sbjct: 6   GVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAIRTA 65

Query: 300 CSHVE 314
            SHV+
Sbjct: 66  ISHVQ 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,551,503
Number of Sequences: 37544
Number of extensions: 346855
Number of successful extensions: 737
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)