Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_P02
         (970 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   158   5e-39
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    31   1.6  
U64848-15|AAB04891.1|  384|Caenorhabditis elegans Hypothetical p...    28   8.7  
AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical...    28   8.7  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  158 bits (384), Expect = 5e-39
 Identities = 74/114 (64%), Positives = 89/114 (78%)
 Frame = +1

Query: 313 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 492
           +NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  GV    S
Sbjct: 76  KNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATIS 135

Query: 493 PKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 654
             QKDE+++EGN ++ VS +AA IQQST VK KDIRKFLDG+YVSEKTT+V  D
Sbjct: 136 TAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189



 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 29/62 (46%), Positives = 46/62 (74%)
 Frame = +3

Query: 129 GLTVHVQSRLVPVKGPRGVLKRXFKHLAVDIRMVNPRLLKVEXWFGSKKELAAVRTVCSH 308
           G+T  V++R+V V GPRG +++ F+HL +++  +    L+V  WFG +KELAA+RTVCSH
Sbjct: 15  GVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELAAIRTVCSH 74

Query: 309 VE 314
           ++
Sbjct: 75  IK 76


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -2

Query: 645 HNSCFLRYIKTIQELSDILILDCSRLLDESSRARDIFQ 532
           +N+C LR IK +  L+ +L  + SRL +  SR RD+F+
Sbjct: 25  NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFK 60


>U64848-15|AAB04891.1|  384|Caenorhabditis elegans Hypothetical
           protein C50E3.13 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = -3

Query: 293 PHGGKLLFGXEPXLNLQETRVYHANVNSQVFKVPFENSAGPFNWHQTRLHMDRKPG 126
           P G + L   +P LN     VY ++      +   ++  GP NW   R   D   G
Sbjct: 306 PRGTEGLGADDPDLNDSGGTVYQSDEEESEDEAEIDHQEGPSNWRPKRPRRDDDEG 361


>AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical
           protein Y56A3A.15 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 654 VI*HNSCFLRYIKTIQELSDILILDCSRLLDESSRARD 541
           ++ HN  +L + KT   L DIL+ +CS+   E +   D
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSKFSIEYNNLPD 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,862,864
Number of Sequences: 27780
Number of extensions: 303175
Number of successful extensions: 756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)